Factsheet for VIT_10s0003g03610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	37.23	92.92
VIT_10s0003g03540.t01	Wine grape	cytosol	67.38	85.2
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	79.43	81.45
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	15.6	65.67
VIT_09s0054g01500.t01	Wine grape	cytosol	21.28	60.0
VIT_09s0054g01130.t01	Wine grape	cytosol	36.17	54.55
VIT_09s0054g01370.t01	Wine grape	cytosol	24.47	51.49
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	25.89	44.24
VIT_09s0054g01290.t01	Wine grape	cytosol	19.15	41.86
VIT_04s0008g03000.t01	Wine grape	cytosol	41.49	38.11
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	8.51	37.5
VIT_09s0054g01480.t01	Wine grape	cytosol	55.67	37.38
VIT_10s0003g03530.t01	Wine grape	cytosol	86.17	33.47
VIT_10s0003g03650.t01	Wine grape	cytosol	84.4	31.36
VIT_10s0003g03520.t01	Wine grape	cytosol	82.98	31.08
VIT_10s0003g03660.t01	Wine grape	cytosol	85.11	30.34
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	26.95	25.76
VIT_09s0054g01220.t01	Wine grape	cytosol	56.74	21.14
VIT_09s0054g01180.t01	Wine grape	cytosol	46.81	20.53
VIT_11s0065g00030.t01	Wine grape	cytosol	54.96	20.45
VIT_09s0054g01210.t01	Wine grape	cytosol	54.61	20.34
VIT_09s0054g01390.t01	Wine grape	cytosol	55.32	20.34
VIT_09s0054g01410.t01	Wine grape	cytosol	54.96	20.16
VIT_09s0054g01230.t01	Wine grape	cytosol	53.19	19.51
VIT_09s0018g00630.t01	Wine grape	cytosol	51.42	19.13
VIT_09s0054g01550.t01	Wine grape	cytosol	50.0	18.6
VIT_09s0054g01120.t01	Wine grape	cytosol	46.81	18.54
VIT_09s0054g01110.t01	Wine grape	cytosol	51.42	18.22
VIT_11s0065g00640.t01	Wine grape	cytosol	48.58	18.03
VIT_09s0054g01520.t01	Wine grape	cytosol	55.32	17.95
Zm00001d024337_P001	Maize	cytosol	42.55	16.6
TraesCS4A01G495100.1	Wheat	cytosol	43.97	16.38
TraesCS7D01G004000.1	Wheat	cytosol	43.26	16.07
TraesCS7A01G003500.1	Wheat	cytosol	43.26	16.07
VIT_10s0003g03550.t01	Wine grape	extracellular	5.67	16.0
Os08t0223900-00	Rice	cytosol	44.33	15.92
EES13537	Sorghum	cytosol	42.91	15.88
VIT_09s0054g01090.t01	Wine grape	cytosol	50.0	14.86
HORVU7Hr1G000400.1	Barley	cytosol, plastid	33.69	12.89
VIT_09s0054g01250.t01	Wine grape	cytosol	10.64	10.1
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	1.77	7.35
VIT_04s0008g02980.t01	Wine grape	mitochondrion	3.9	7.05
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	6.74	3.71
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	1.42	3.67
VIT_10s0003g03570.t01	Wine grape	cytosol	1.77	3.47
VIT_09s0054g01340.t01	Wine grape	cytosol	4.61	3.14
VIT_09s0054g01280.t01	Wine grape	cytosol	2.48	1.97
CDY20917	Canola	cytosol	2.84	1.95
VIT_10s0116g01060.t01	Wine grape	cytosol	0.35	1.12
VIT_09s0054g01140.t01	Wine grape	extracellular	0.71	1.01
VIT_09s0054g01470.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.0	0.0
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	0.0	0.0
VIT_09s0054g01200.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01170.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01160.t01	Wine grape	extracellular	0.0	0.0
VIT_04s0008g02990.t01	Wine grape	cytosol	0.0	0.0
CDY34478	Canola	cytosol, extracellular	0.0	0.0

Protein Annotations

ArrayExpress:VIT_10s0003g03610	EMBL:FN595992	EnsemblPlants:VIT_10s0003g03610.t01	EnsemblPlantsGene:VIT_10s0003g03610	Gene3D:1.50.10.20	InterPro:SQ_cyclase_N
InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	PFAM:PF13249	ProteinID:CCB55799	ProteinID:CCB55799.1
SEG:seg	SUPFAM:SSF48239	UniParc:UPI000210934A	UniProt:F6HLS5	MapMan:9.1.4.3	:

Description

No Description!

Coordinates

chr10:+:6062309..6065135

Molecular Weight (calculated)

32520.0 Da

IEP (calculated)

6.308

GRAVY (calculated)

-0.232

Length

282 amino acids

Sequence
(BLAST)

001: MWKLKIAEGH GPWLYSLNNF VGRQIWEFDP EDGTPEEREE VRKVQENFTK NRFRYKPNGD LLMRMQLIKE NQIDLSIPPV RLGENEEVTC EVVTTAVRKS
101: VRLNRAIQAK DGHWPVENAG PLFFTPPLIM VLYFTGTLNF ALTPEHIVLE LLRYITNHQN EDGGWGFHID GYSTMLGTTV SYISMHILGV GPDDKALAAG
201: RKWILDRGGA TYSPSWGKCY ISVFGLYEWS GCNPLPPEFW LFPSFFPMHL IKFGATVEQF TCLCRIYTAQ DFNHPLLTWF YN

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.