Factsheet for PGSC0003DMT400073861

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G407200.1	Wheat	cytosol	10.55	69.33
KXG29303	Sorghum	cytosol	11.36	68.29
Solyc04g070980.2.1	Tomato	plastid	81.14	52.63
VIT_11s0065g00640.t01	Wine grape	cytosol	79.51	51.58
KRH74134	Soybean	endoplasmic reticulum	78.5	51.12
AT2G07050.1	Thale cress	cytosol	77.69	50.46
CDY50938	Canola	cytosol	76.88	49.67
Bra013167.1-P	Field mustard	cytosol	77.08	49.54
CDX93093	Canola	cytosol	77.08	49.48
EES06259	Sorghum	cytosol	75.25	49.01
CDX85104	Canola	cytosol	75.66	48.82
Zm00001d015234_P002	Maize	cytosol	74.85	48.43
CDX77512	Canola	cytosol	76.06	48.26
TraesCS6B01G139000.1	Wheat	golgi	73.43	47.63
Os02t0139700-01	Rice	cytosol	73.23	47.56
TraesCS6A01G110800.1	Wheat	cytosol, golgi	73.23	47.5
Zm00001d053889_P004	Maize	cytosol	73.23	47.5
EES06258	Sorghum	cytosol	72.62	47.04
TraesCS6B01G138500.1	Wheat	cytosol	68.36	46.81
PGSC0003DMT400048787	Potato	cytosol	5.48	46.55
Zm00001d008671_P001	Maize	cytosol	49.9	46.42
HORVU6Hr1G019840.10	Barley	mitochondrion	73.43	45.76
TraesCS6D01G099400.2	Wheat	cytosol	73.63	45.6
TraesCS2D01G387000.1	Wheat	cytosol, plastid	70.39	44.83
Bra014952.1-P	Field mustard	cytosol	75.86	44.31
TraesCS6D01G098800.1	Wheat	mitochondrion	67.95	43.79
TraesCS6A01G110200.1	Wheat	mitochondrion	66.94	43.77
TraesCS5A01G005900.1	Wheat	cytosol, golgi, mitochondrion, plastid	54.36	42.07
TraesCS6A01G110300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	63.08	41.08
TraesCS5A01G004900.1	Wheat	mitochondrion	63.08	40.98
TraesCS5D01G011800.1	Wheat	mitochondrion	62.88	40.84
Zm00001d008674_P001	Maize	mitochondrion	42.39	40.35
TraesCS5D01G006600.1	Wheat	cytosol	62.07	40.26
TraesCS5D01G006700.1	Wheat	cytosol	62.07	40.26
TraesCS6D01G098600.1	Wheat	cytosol	68.56	39.81
TraesCS5B01G004800.1	Wheat	cytosol	58.22	38.63
PGSC0003DMT400048796	Potato	cytosol	58.22	37.71
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	32.86	37.67
PGSC0003DMT400035250	Potato	cytosol	51.32	36.56
PGSC0003DMT400048795	Potato	cytosol	53.96	36.29
PGSC0003DMT400051584	Potato	cytosol	55.98	36.27
PGSC0003DMT400043981	Potato	cytosol	40.37	32.62
Os02t0139500-02	Rice	cytosol	22.11	30.79
TraesCS2B01G407300.1	Wheat	cytosol	26.17	29.25
PGSC0003DMT400062376	Potato	extracellular, vacuole	11.36	29.02
EES08419	Sorghum	cytosol, mitochondrion, plastid	0.41	1.01
GSMUA_Achr7P15800_001	Banana	cytosol, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	MapMan:9.1.5.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
UniProt:M1CST0	PFAM:PF13243	EnsemblPlantsGene:PGSC0003DMG400028702	PGSC:PGSC0003DMG400028702	EnsemblPlants:PGSC0003DMT400073861	ScanProsite:PS01074
PANTHER:PTHR11764	PANTHER:PTHR11764:SF27	InterPro:SQ_cyclase_C	SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787
InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000294C9B2	:	:	:

Description

Cycloartenol synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400028702]

Coordinates

chr4:+:46543274..46551909

Molecular Weight (calculated)

56094.1 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.256

Length

493 amino acids

Sequence
(BLAST)

001: MSYLYGKRFV GPITPTVLSL RKELFTVPYH KINWNKARNE CAKEDLYYPH PLLQDILWTS LDKLIEPLFM HWPGKKLREK ALSTVMDHIH YEDENTRYIC
101: LGPVNKVLNM LCCWVEDSSS EAFKLHLPRL YDYLWIAEDG MKIQGYNGSQ SWDTSFAIQA IISTNLVEEY GPTLRKAHKF MKNSQVLDDC PGNLDFWYRH
201: ISKGAWPFST ADHGWPISDC TAEGLKACLL LSKLPVEIVG EPLKANRLYD AVNVMLSLQN PDGGIGTYEL SRSYPWLEII NPAETFGDIV IDYPYVECTS
301: AIIQALAAFK KLYPGYRKED VERCIEKGAA FIEKIQEADG SWYGCWGVCF TYGTWFGVKG LLDAGRNFNN SYNIRKACDF LLSKQVVSGG WGESYLSCQN
401: KVYTNLKGNK SHSVCTAWAM LALIEAGQGE RDPTPLHRAA KVLINSQLEN GDFPQQEISG VFNKNCMISY SAYRNIFPIW ALGQYQSQLL NPQ

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.