Factsheet for TraesCS5A01G005900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, cytosol

Predictor Summary:

golgi 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G006700.1	Wheat	cytosol	94.82	79.47
TraesCS5B01G004800.1	Wheat	cytosol	84.77	72.68
TraesCS5A01G004900.1	Wheat	mitochondrion	86.19	72.33
VIT_09s0054g01250.t01	Wine grape	cytosol	28.41	60.94
GSMUA_Achr7P15790_001	Banana	cytosol	55.57	58.32
TraesCS6A01G110800.1	Wheat	cytosol, golgi	67.19	56.32
Solyc04g050670.1.1	Tomato	cytosol	14.29	56.17
TraesCS6A01G110200.1	Wheat	mitochondrion	66.25	55.97
PGSC0003DMT400073861	Potato	mitochondrion	42.07	54.36
KRH74134	Soybean	endoplasmic reticulum	63.42	53.37
CDY50938	Canola	cytosol	63.42	52.95
Bra013167.1-P	Field mustard	cytosol	63.58	52.8
CDX93093	Canola	cytosol	63.58	52.73
AT2G07050.1	Thale cress	cytosol	62.64	52.57
VIT_09s0054g01120.t01	Wine grape	cytosol	58.71	52.53
VIT_11s0065g00640.t01	Wine grape	cytosol	61.85	51.84
TraesCS6A01G110300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	61.38	51.65
VIT_09s0054g01550.t01	Wine grape	cytosol	61.38	51.58
CDX85104	Canola	cytosol	61.85	51.57
CDX77512	Canola	cytosol	62.64	51.35
VIT_09s0018g00630.t01	Wine grape	cytosol	60.6	50.92
Solyc04g070980.2.1	Tomato	plastid	60.75	50.92
VIT_09s0054g01180.t01	Wine grape	cytosol	50.24	49.77
VIT_09s0054g01110.t01	Wine grape	cytosol	60.91	48.74
TraesCS7A01G232900.1	Wheat	mitochondrion	56.51	47.94
TraesCS4A01G498200.2	Wheat	cytosol	55.26	46.87
TraesCS4A01G499100.1	Wheat	cytosol	29.36	46.87
VIT_04s0008g02990.t01	Wine grape	cytosol	6.91	46.81
TraesCS7A01G001700.1	Wheat	mitochondrion	49.92	46.09
TraesCS4A01G000600.1	Wheat	mitochondrion	54.0	45.5
TraesCS6A01G111400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	54.95	45.28
TraesCS4A01G495100.1	Wheat	cytosol	53.69	45.18
Bra014952.1-P	Field mustard	cytosol	59.81	45.14
TraesCS7A01G003500.1	Wheat	cytosol	53.22	44.66
TraesCS4A01G496400.1	Wheat	mitochondrion	52.9	44.58
VIT_04s0008g03000.t01	Wine grape	cytosol	20.41	42.35
VIT_09s0054g01090.t01	Wine grape	cytosol	60.91	40.89
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	21.82	32.33
PGSC0003DMT400062376	Potato	extracellular, vacuole	7.38	24.35
CDY29789	Canola	cytosol	2.83	18.37
TraesCS4A01G498900.1	Wheat	cytosol	2.35	16.3
VIT_04s0008g02980.t01	Wine grape	mitochondrion	3.61	14.74
PGSC0003DMT400048787	Potato	cytosol	0.31	3.45
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.16	1.47

Protein Annotations

EnsemblPlants:TraesCS5A01G005900.1	EnsemblPlantsGene:TraesCS5A01G005900	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF36	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	SEG:seg	SUPFAM:SSF48239
TIGR:cd02892	TIGRFAMs:TIGR01787	MapMan:9.1.4.3	:	:	:

Description

No Description!

Coordinates

chr5A:+:3435424..3445775

Molecular Weight (calculated)

72687.3 Da

IEP (calculated)

6.604

GRAVY (calculated)

-0.165

Length

637 amino acids

Sequence
(BLAST)

001: MLLFLSKSNG LKTNLPDPIK LEQHGYATKE AVLISLKRAV SRYSMLQADD GHWPGEFAGT LFLLPSLIVA LHVTRSLTTV LTSEHQKEIR RYLYNHQNED
101: GGWGLHIEGT STMFCSVMNY VALRLLWEGL DSHGSMLQAR SWILDHGGAT LTPSWGKFFL SVLGVYDWSG NNPLPPELWM VPYFLPIHPG RMWCHSRLVY
201: LPMSYLYGKR FVGTTTSIVQ DLRNELYTVP YNEIDWDKAR NGCAKEDLYY SHSPLQDIVW ATLKKIGEPI FLHWPGSNLR KRALDNVMKH IKYEDETTQY
301: LCIGPLNKML NMICCWVEDP NSEAFKLHVE RIYDFLWVAE DGMKLKSYNG SQLWDTVLTV QAIFATGLTK EFPHTIKLAH DYIKRSQISA NFPGDQTKWH
401: RHIYKGGWTH STADHGWPVS DCTAEALKAI LLLIKLPRKL VGEPMETSRL DDAVNILLSL MNDDGSFGAY ELTRSYEWLE LLNPSESFGD IMIEHSYVEC
501: TSSVIQGLVL FREMYPKHCH MEEIENCIQK AADYIESIQR SDGSWYGCWA ICFTYGTWFG VRGLIAAGRT YKNSQAIRKA CEFLLSKELL PLGGWGESYL
601: SGQDMVYTNL EGNRAHAVNT SWAMLALIDA GHVILFL

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.