Factsheet for TraesCS6A01G110800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G139000.1	Wheat	golgi	98.16	98.16
TraesCS6D01G099400.2	Wheat	cytosol	98.03	93.59
HORVU6Hr1G019840.10	Barley	mitochondrion	95.26	91.53
EES06259	Sorghum	cytosol	88.42	88.77
Os02t0139700-01	Rice	cytosol	86.45	86.56
Zm00001d015234_P002	Maize	cytosol	85.26	85.04
Zm00001d053889_P004	Maize	cytosol	84.87	84.87
EES06258	Sorghum	cytosol	84.87	84.76
GSMUA_Achr7P15790_001	Banana	cytosol	64.21	80.4
TraesCS6A01G110200.1	Wheat	mitochondrion	75.92	76.53
KRH74134	Soybean	endoplasmic reticulum	74.47	74.77
AT2G07050.1	Thale cress	cytosol	73.95	74.04
VIT_11s0065g00640.t01	Wine grape	cytosol	73.82	73.82
CDY50938	Canola	cytosol	74.08	73.79
Bra013167.1-P	Field mustard	cytosol	74.08	73.4
CDX93093	Canola	cytosol	74.08	73.31
PGSC0003DMT400073861	Potato	mitochondrion	47.5	73.23
VIT_09s0018g00630.t01	Wine grape	cytosol	71.84	72.03
VIT_09s0054g01550.t01	Wine grape	cytosol	71.71	71.9
VIT_09s0054g01180.t01	Wine grape	cytosol	60.53	71.54
Solyc04g070980.2.1	Tomato	plastid	71.18	71.18
CDX77512	Canola	cytosol	72.76	71.17
CDX85104	Canola	cytosol	71.45	71.07
VIT_09s0054g01120.t01	Wine grape	cytosol	66.58	71.07
VIT_09s0054g01250.t01	Wine grape	cytosol	27.63	70.71
TraesCS6A01G110300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	70.13	70.41
TraesCS5A01G004900.1	Wheat	mitochondrion	69.74	69.83
VIT_09s0054g01110.t01	Wine grape	cytosol	72.24	68.97
TraesCS5A01G005900.1	Wheat	cytosol, golgi, mitochondrion, plastid	56.32	67.19
Solyc04g050670.1.1	Tomato	cytosol	14.21	66.67
Bra014952.1-P	Field mustard	cytosol	70.0	63.03
TraesCS7A01G232900.1	Wheat	mitochondrion	58.82	59.52
TraesCS7A01G001700.1	Wheat	mitochondrion	53.82	59.28
TraesCS4A01G498200.2	Wheat	cytosol	58.55	59.25
TraesCS4A01G498900.1	Wheat	cytosol	7.11	58.7
VIT_09s0054g01090.t01	Wine grape	cytosol	72.89	58.38
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	5.13	57.35
TraesCS4A01G499100.1	Wheat	cytosol	30.0	57.14
TraesCS4A01G496400.1	Wheat	mitochondrion	55.92	56.22
TraesCS6A01G111400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	56.32	55.37
TraesCS4A01G000600.1	Wheat	mitochondrion	54.74	55.03
TraesCS4A01G495100.1	Wheat	cytosol	54.47	54.69
VIT_04s0008g03000.t01	Wine grape	cytosol	21.84	54.07
TraesCS7A01G003500.1	Wheat	cytosol	53.95	54.02
PGSC0003DMT400048787	Potato	cytosol	3.95	51.72
VIT_04s0008g02990.t01	Wine grape	cytosol	5.92	47.87
VIT_04s0008g02980.t01	Wine grape	mitochondrion	9.61	46.79
PGSC0003DMT400062376	Potato	extracellular, vacuole	11.18	44.04
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	21.32	37.67
CDY29789	Canola	cytosol	3.82	29.59

Protein Annotations

EnsemblPlants:TraesCS6A01G110800.1	EnsemblPlantsGene:TraesCS6A01G110800	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF27	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	SEG:seg	SUPFAM:SSF48239
TIGR:cd02892	TIGRFAMs:TIGR01787	MapMan:9.1.4.3	MapMan:9.1.5.3	:	:

Description

No Description!

Coordinates

chr6A:-:79946942..79958566

Molecular Weight (calculated)

86114.8 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.278

Length

760 amino acids

Sequence
(BLAST)

001: MWRLKIAEGG ADPWLRTKNA HVGRQVWEFD AAADDPDALA AVDAARREFA ARRHQLKHSA DLPMRIQLAK ENPLKLDLPA IKLGENEDVT EEAVSTTLKR
101: ALSTFSTLQA HDGHWPGDYG GPMFLMPGLL IMLHVTGAMN TVLSPEHQKE IRRYLYNHQN EDGGWGLHIE GPSTMFGSAL TYVSLRLLGE GPDSGDGAME
201: KGRNWILDHG GATYITSWGK FWLAVLGVFD WSGNNPLPPE IWMLPYCLPV HPGRMWCHCR MVYLPMCYVY GKRFVGRITP IILELRNELF KVPYSEVDWD
301: SARNLCAKED LYYPHPLIQD ILWATLHKFV EPVMMHWPGN KLREKSLNHV MQHVHYEDEN TRYICIGPVN KVLNMLACWI EDPNSEAFKL HIPRIYDYLW
401: VAEDGMKMQG YNGSQLWDTA FAVQAIAATD LIEEFAPTLK LAHDYIKNSQ VVDDCPGDLS YWYRHISKGA WPFSTADHGW PISDCTAEGL KASLLLSKIS
501: PEIVGEPVEV NRLYDAVNCL MSWMNENGGF ATYELQRSYA WLELINPAET FGDIVIDYPY VECTSAAIQA LTSFKKLYPG HRRKDVDNCI NKAANYIENI
601: QRSDGSWYGS WAVCFTYGTW FGVKGLVAAG RTYKTSPAIR KACDFLLSKE LPFGGWGESY LSSQDQVYTN LEGKHTHAVN TGWAMLTLID AGQAERDPTP
701: LHRAAKVLVN LQSEDGEFPQ QEIMGVFNKN CMISYSQYRN IFPIWALGEY RCRVLGAGKK

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.