Factsheet for TraesCS6A01G110300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G110200.1	Wheat	mitochondrion	89.96	90.32
TraesCS6D01G098800.1	Wheat	mitochondrion	87.71	86.8
Os02t0139500-02	Rice	cytosol	36.06	77.12
TraesCS6A01G110800.1	Wheat	cytosol, golgi	70.41	70.13
GSMUA_Achr7P15790_001	Banana	cytosol	54.43	67.87
KRH74134	Soybean	endoplasmic reticulum	64.47	64.47
VIT_09s0054g01250.t01	Wine grape	cytosol	25.23	64.31
VIT_11s0065g00640.t01	Wine grape	cytosol	64.2	63.95
AT2G07050.1	Thale cress	cytosol	63.54	63.37
PGSC0003DMT400073861	Potato	mitochondrion	41.08	63.08
CDY50938	Canola	cytosol	63.28	62.78
Bra013167.1-P	Field mustard	cytosol	63.54	62.71
VIT_09s0054g01180.t01	Wine grape	cytosol	53.1	62.52
CDX93093	Canola	cytosol	63.41	62.5
TraesCS5A01G004900.1	Wheat	mitochondrion	62.22	62.06
CDX85104	Canola	cytosol	62.35	61.78
CDX77512	Canola	cytosol	63.41	61.78
TraesCS5A01G005900.1	Wheat	cytosol, golgi, mitochondrion, plastid	51.65	61.38
VIT_09s0018g00630.t01	Wine grape	cytosol	61.16	61.08
VIT_09s0054g01550.t01	Wine grape	cytosol	60.77	60.69
Solyc04g070980.2.1	Tomato	plastid	59.45	59.21
VIT_09s0054g01120.t01	Wine grape	cytosol	55.61	59.13
VIT_09s0054g01110.t01	Wine grape	cytosol	61.56	58.54
Bra014952.1-P	Field mustard	cytosol	60.77	54.5
TraesCS7A01G232900.1	Wheat	mitochondrion	54.03	54.46
TraesCS7A01G001700.1	Wheat	mitochondrion	49.54	54.35
TraesCS4A01G498200.2	Wheat	cytosol	53.5	53.93
Solyc04g050670.1.1	Tomato	cytosol	11.49	53.7
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	4.76	52.94
TraesCS4A01G499100.1	Wheat	cytosol	27.61	52.38
TraesCS4A01G496400.1	Wheat	mitochondrion	51.78	51.85
TraesCS4A01G000600.1	Wheat	mitochondrion	51.12	51.19
TraesCS6A01G111400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	51.92	50.84
TraesCS4A01G495100.1	Wheat	cytosol	49.67	49.67
VIT_09s0054g01090.t01	Wine grape	cytosol	61.96	49.42
TraesCS4A01G498900.1	Wheat	cytosol	5.94	48.91
TraesCS7A01G003500.1	Wheat	cytosol	48.88	48.75
VIT_04s0008g03000.t01	Wine grape	cytosol	19.29	47.56
VIT_04s0008g02990.t01	Wine grape	cytosol	5.68	45.74
VIT_04s0008g02980.t01	Wine grape	mitochondrion	8.98	43.59
PGSC0003DMT400048787	Potato	cytosol	3.3	43.1
PGSC0003DMT400062376	Potato	extracellular, vacuole	10.17	39.9
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	20.74	36.51
CDY29789	Canola	cytosol	3.96	30.61

Protein Annotations

EnsemblPlants:TraesCS6A01G110300.1	EnsemblPlantsGene:TraesCS6A01G110300	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
InterPro:PFTB_repeat	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF27	PFAM:PF00432	PFAM:PF13243	PFAM:PF13249	SEG:seg	SUPFAM:SSF48239
TIGR:cd02892	TIGRFAMs:TIGR01787	MapMan:9.1.4.3	MapMan:9.1.5.3	:	:

Description

No Description!

Coordinates

chr6A:-:79342346..79353311

Molecular Weight (calculated)

86114.7 Da

IEP (calculated)

7.731

GRAVY (calculated)

-0.194

Length

757 amino acids

Sequence
(BLAST)

001: MWRLRIGEEA GGEPWLRTTN AHAGRQVWEF DPAAAGALDD VDNARREYSS RRTSSSTALM RLQFAELTAP KLDIPGIKLQ EHEDVTKEAV LTSLKRAIGQ
101: LSTLQTHDGH WPGDIAGPMF LLPGLVIALH STGALNTVLS SKHQREIRRY LYNHQNKDGG WGLHIEGPST MFGSVLNYVT LRLLEKGSDT TFTTSWGKFW
201: LSVLGVFDWS GNNPLLPELW LLPYCLPFHP GRMWSHCRMV YFPMSYIYGK RFVGPITPTV LNLRKELYKV PYDEIDWDKA RSQCAKEDLY CPHPLGQDIL
301: WSTLHKFVEP VMSHWPGSKL REKALKNAMQ HIHYEDENTQ YICSGAVGKV LNMLCCWIED PNSQEFKLHI PRIYDYLWVA EDGMKMQGYN GSQLWDTTFT
401: VEAILATELT EEFCPTLKLA HGYIKNSQVL HDCHGDLSVW YRHISKGAWT FSTVDHVWPV SDCTALGLKA SLLLSKISPK MVGVSIEANR LYDAVNCLLS
501: WMNGNGGFAY SPGLMPGWSV VECTSEVIQA LTAFRKHYPG HRREEIDKCI HKAENFIESI QRSDGSWLVL KLCSGRKECP IHMHLLMLFG VFTQTQKLLP
601: LLLIVLSICN RYGSWAICFT YGTWYAVRGL VAAGRTFKNC HAIRKACDFL LSKETPSGGW GESYLSCRDK VYTELEGRRP HVVNTSWAML AERDPGPLHR
701: AARVLINLQL EDGEFLQQEI IGIFARNCTI SYSQYRNIFP IWALGEYRCR VLTMPSC

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.