Factsheet for TraesCS5D01G006600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G011800.1	Wheat	mitochondrion	90.92	91.04
TraesCS5D01G006700.1	Wheat	cytosol	84.34	84.34
TraesCS6D01G098800.1	Wheat	mitochondrion	68.68	68.24
GSMUA_Achr7P15790_001	Banana	cytosol	53.55	67.05
TraesCS2D01G387000.1	Wheat	cytosol, plastid	67.37	66.15
TraesCS6D01G099400.2	Wheat	cytosol	68.68	65.58
KRH74134	Soybean	endoplasmic reticulum	64.74	64.99
CDY50938	Canola	cytosol	64.34	64.09
AT2G07050.1	Thale cress	cytosol	63.82	63.9
Bra013167.1-P	Field mustard	cytosol	64.47	63.89
VIT_11s0065g00640.t01	Wine grape	cytosol	63.68	63.68
CDX93093	Canola	cytosol	64.34	63.67
CDX85104	Canola	cytosol	62.89	62.57
CDX77512	Canola	cytosol	63.95	62.55
PGSC0003DMT400073861	Potato	mitochondrion	40.26	62.07
VIT_09s0054g01180.t01	Wine grape	cytosol	52.37	61.9
VIT_09s0054g01550.t01	Wine grape	cytosol	61.71	61.87
TraesCS6D01G098600.1	Wheat	cytosol	68.82	61.6
VIT_09s0018g00630.t01	Wine grape	cytosol	60.66	60.82
VIT_09s0054g01120.t01	Wine grape	cytosol	56.97	60.81
Solyc04g070980.2.1	Tomato	plastid	60.53	60.53
TraesCS7D01G173600.1	Wheat	cytosol	42.63	60.34
VIT_09s0054g01250.t01	Wine grape	cytosol	23.42	59.93
TraesCS7D01G233100.2	Wheat	mitochondrion	58.16	58.85
VIT_09s0054g01110.t01	Wine grape	cytosol	61.58	58.79
TraesCS6D01G099900.1	Wheat	cytosol	15.92	58.74
TraesCS4D01G000600.2	Wheat	mitochondrion	55.39	55.84
Bra014952.1-P	Field mustard	cytosol	61.45	55.33
TraesCS6D01G006500.1	Wheat	cytosol	48.42	55.17
TraesCS6D01G100000.1	Wheat	mitochondrion	55.66	55.08
Solyc04g050670.1.1	Tomato	cytosol	11.71	54.94
TraesCS7D01G004000.1	Wheat	cytosol	53.95	54.02
TraesCS7D01G001800.3	Wheat	mitochondrion	30.53	53.58
VIT_04s0008g03000.t01	Wine grape	cytosol	21.58	53.42
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	4.47	50.0
TraesCS7D01G173700.1	Wheat	cytosol, mitochondrion	14.61	49.33
VIT_09s0054g01090.t01	Wine grape	cytosol	61.45	49.21
VIT_04s0008g02990.t01	Wine grape	cytosol	5.79	46.81
PGSC0003DMT400062376	Potato	extracellular, vacuole	11.05	43.52
PGSC0003DMT400048787	Potato	cytosol	3.29	43.1
VIT_04s0008g02980.t01	Wine grape	mitochondrion	8.82	42.95
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	19.21	33.95
CDY29789	Canola	cytosol	3.95	30.61

Protein Annotations

EnsemblPlants:TraesCS5D01G006600.1	EnsemblPlantsGene:TraesCS5D01G006600	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF36	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	SEG:seg	SUPFAM:SSF48239
TIGR:cd02892	TIGRFAMs:TIGR01787	MapMan:9.1.4.3	:	:	:

Description

No Description!

Coordinates

chr5D:+:5557189..5565296

Molecular Weight (calculated)

86572.5 Da

IEP (calculated)

6.161

GRAVY (calculated)

-0.273

Length

760 amino acids

Sequence
(BLAST)

001: MWRLKIGEGG GNPLLRTTNG HVGRQVWEFD PAADDPDEVA AVDAARRDFT NRRYQMKNSS DLLMRMQFSK SNGLKMNLPP VKLDQQHGYA TEDDILVSLK
101: RAIRSYSTLQ AHDGHWPGDY AGTLFLLPSL IVALHVTGAL STVLTSEHQK EIRRYLYNHQ NEDGGWGLHI EGTSTMFCTV MIYVALRLLG EGLDSCGAML
201: QARSWILDHG GATLTPSWGK FFLSVLGVYD WSGNNPLPPE LWMMPYFLPI HPGRMWCNCR LVYLPMSYLY GKRFVGATTS IVLDLRKELY DVPYNEIDWD
301: KARNGCAKED LYYPHSSLQN VIWDTLKKIG EPVLMHWPGS NLRKKALDIV MKHIKYEDET TQYICIAPLN KMLNMICCWV EDPNSEAFKH HTERVYDFLW
401: VAEDGMKMKS YNGSQLWDTT LTVQAIFATG LTEEFSQTIK LAHDYIIHSQ IRMDCPGDQS KGYRHISKGG WTHSTADQGW PVSDCTAEAL KVLLLLSKIH
501: PELVGEPIET SRLDDAINIL LSLMNEDGSF GAYELTRSYE WLEMLNPSES FGGIMIEYPY VECTSSVIQG LVLFREMYPG HYRRKEIDNC IRNASNYIES
601: IQWDDGSWYG CWAICFTYAT WYGVRGLVAA GRTYENSQSI RKACEFLLSK EILPSGGWGE SYLSSQDKVY TNLEGNRAHA VNTSWAMLAL IDVGQGKRDP
701: ACLHRAAKVL INFQLEDGEF PQQDIIGATN HNLMLTYAQF RNIFPIWALG EYYRRVMLAT

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.