Factsheet for Solyc05g054350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060250	Potato	cytosol	93.46	93.46
Solyc05g054320.2.1	Tomato	cytosol	87.85	87.85
Solyc01g066470.2.1	Tomato	cytosol, peroxisome	39.25	64.62
Solyc12g099430.1.1	Tomato	cytosol	63.86	63.47
Solyc01g066460.2.1	Tomato	cytosol, peroxisome	38.01	62.56
GSMUA_Achr3P08130_001	Banana	cytosol	61.68	62.46
GSMUA_Achr8P10290_001	Banana	cytosol	61.06	61.44
Solyc06g009170.2.1	Tomato	extracellular	60.75	61.32
VIT_05s0077g01990.t01	Wine grape	cytoskeleton, cytosol, peroxisome	60.12	60.88
KRH50813	Soybean	cytosol	40.81	60.65
VIT_05s0077g02010.t01	Wine grape	cytosol	59.19	59.94
KRH02278	Soybean	cytosol	66.04	59.89
GSMUA_AchrUn_...	Banana	peroxisome	58.57	59.31
Solyc01g099910.2.1	Tomato	cytosol	57.94	59.24
Solyc09g075300.2.1	Tomato	cytosol	58.26	58.8
VIT_05s0077g02020.t01	Wine grape	cytosol	57.94	58.68
Solyc01g066450.2.1	Tomato	cytosol	59.81	57.31
GSMUA_Achr8P22510_001	Banana	peroxisome	48.6	57.14
Os01t0255000-01	Rice	cytosol	56.39	56.21
TraesCS7D01G228900.1	Wheat	cytosol	53.89	56.17
CDY09722	Canola	cytosol	57.32	55.93
TraesCS7B01G129100.1	Wheat	cytosol	56.07	55.9
Bra012750.1-P	Field mustard	cytosol	56.7	55.83
CDX90553	Canola	cytosol	56.39	55.52
CDX90550	Canola	cytosol	57.01	55.45
Bra012747.1-P	Field mustard	cytosol	57.01	55.45
Os05t0273800-01	Rice	cytosol, peroxisome, plastid	57.01	55.29
AT4G15955.3	Thale cress	cytosol	52.34	55.26
CDY09727	Canola	cytosol	56.07	55.05
TraesCS3B01G204900.1	Wheat	peroxisome	54.52	54.35
TraesCS3D01G180600.1	Wheat	peroxisome	54.52	54.35
TraesCS7A01G225600.1	Wheat	cytosol	54.52	54.35
TraesCS3A01G175200.2	Wheat	peroxisome	54.21	54.04
TraesCS7A01G222400.1	Wheat	cytosol	50.78	53.8
TraesCS7B01G128800.1	Wheat	cytosol	53.89	53.73
TraesCS7B01G194000.1	Wheat	cytosol	53.89	53.56
EES00506	Sorghum	cytosol	54.21	53.54
TraesCS7D01G224000.1	Wheat	unclear	53.58	53.42
TraesCS7B01G128900.1	Wheat	unclear	53.27	53.11
CDY57860	Canola	cytosol	50.16	52.96
HORVU7Hr1G045640.2	Barley	plastid	57.32	52.27
Os01t0255100-01	Rice	cytosol	52.65	52.16
TraesCS7D01G224200.1	Wheat	golgi, unclear	56.39	51.57
HORVU3Hr1G070810.3	Barley	cytosol, peroxisome	16.51	51.46
TraesCS7A01G222600.1	Wheat	golgi, unclear	55.76	50.85
VIT_05s0077g02000.t01	Wine grape	cytosol, mitochondrion, peroxisome	29.91	50.26
HORVU7Hr1G045620.2	Barley	cytosol, mitochondrion, peroxisome	23.68	49.35
HORVU3Hr1G070830.1	Barley	cytosol, peroxisome	25.86	47.7
AT4G15960.1	Thale cress	mitochondrion	54.83	46.93
VIT_05s0077g02030.t01	Wine grape	mitochondrion	13.71	46.81
EES17023	Sorghum	extracellular, plastid, vacuole	54.52	46.79
HORVU3Hr1G035400.1	Barley	plastid	54.83	43.46
Solyc02g078570.2.1	Tomato	extracellular	36.14	36.83
GSMUA_Achr3P24120_001	Banana	cytosol	57.32	29.02

Protein Annotations

EnsemblPlants:Solyc05g054350.2.1	EnsemblPlantsGene:Solyc05g054350.2	Gene3D:3.40.50.1820	GO:GO:0003674	GO:GO:0003824	InterPro:AB_hydrolase
InterPro:AB_hydrolase_1	InterPro:Epox_hydrolase-like	InterPro:IPR029058	PANTHER:PTHR43329	PANTHER:PTHR43329:SF13	PFAM:PF12697
PRINTS:PR00412	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002766AD9	UniProt:K4C2B3	MapMan:35.2

Description

No Description!

Coordinates

chr5:-:64275459..64278493

Molecular Weight (calculated)

36217.3 Da

IEP (calculated)

6.146

GRAVY (calculated)

-0.110

Length

321 amino acids

Sequence
(BLAST)

001: MDKIEHKMVA VNGLNMHIAE LGQGPTILFI HGFPELWYSW RHQMVYLAER GYRAVAPDLR GYGDTTGAPL NDPSKFSIFH LVGDVVALLE AISPNEEKVF
101: VVAHDWGALI AWHLCLFRPD KVKALVNSSV HFFPRNPNMN TVEGLKAVYG EDHYISRFQV PGDIEAEFAP IGAKSVLKKI LTFRDTAPFY FPKGKGLEAL
201: PDAPVALSSW LSEEELDYYA NKFEKTGFTG GVNYYRALPI NWELTAPWTG AQLKVPTKFI VGEFDLVYHI PGAKEYIHNG GFKNDVPLLE EVVVLEGAAH
301: FVNQERPHEI SKHIYDFIQN F

Best Arabidopsis Sequence Match ( AT3G05600.1 )
(BLAST)

001: MEGIDHRMVS VNGITMHIAE KGPKEGPVVL LLHGFPDLWY TWRHQISGLS SLGYRAVAPD LRGYGDSDSP ESFSEYTCLN VVGDLVALLD SVAGNQEKVF
101: LVGHDWGAII GWFLCLFRPE KINGFVCLSV PYRSRNPKVK PVQGFKAVFG DDYYICRFQE PGKIEGEIAS ADPRIFLRNL FTGRTLGPPI LPKDNPFGEK
201: PNPNSENIEL PEWFSKKDLD FYVSKFEKAG FTGGLNYYRA MDLNWELTAP WTGAKIQVPV KFMTGDFDMV YTTPGMKEYI HGGGFAADVP TLQEIVVIED
301: AGHFVNQEKP QEVTAHINDF FTKLRDNNKS F

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M9W5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.