CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39527
KRH45468
KRH45469
KRH74431
KRH75634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46570.1	KRH39527	AT2G22680.1	21798944
AT5G46570.1	KRH45468	AT2G22680.1	21798944
AT5G46570.1	KRH45469	AT2G22680.1	21798944
AT5G46570.1	KRH74431	AT2G22680.1	21798944
AT5G46570.1	KRH75634	AT2G22680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04312	Soybean	cytosol	98.79	98.39
VIT_02s0012g01140.t01	Wine grape	cytosol	89.31	89.49
PGSC0003DMT400004190	Potato	cytosol	84.48	85.16
GSMUA_Achr11P...	Banana	cytosol	83.67	84.35
AT5G46570.1	Thale cress	cytosol	81.65	82.82
Bra025014.1-P	Field mustard	cytosol	81.25	82.41
CDX77672	Canola	cytosol	81.25	82.41
CDY33480	Canola	cytosol	81.25	82.41
GSMUA_Achr4P05600_001	Banana	cytosol	81.05	81.87
GSMUA_Achr4P12250_001	Banana	cytosol	82.46	81.8
TraesCS1D01G194300.1	Wheat	cytosol	83.27	81.62
TraesCS1B01G192300.3	Wheat	cytosol	83.06	81.42
Os10t0571300-01	Rice	plasma membrane	83.67	81.05
TraesCS1A01G190200.2	Wheat	cytosol	83.06	80.63
EER94456	Sorghum	cytosol	82.06	80.59
Zm00001d030021_P001	Maize	cytosol	81.45	80.0
CDX78818	Canola	cytosol	78.63	78.63
CDY44497	Canola	cytosol	78.23	78.23
Bra013274.1-P	Field mustard	cytosol	78.23	78.23
Zm00001d047053_P004	Maize	cytosol	81.25	75.75
HORVU1Hr1G049860.2	Barley	mitochondrion	83.06	71.28
CDY01511	Canola	cytosol	43.75	61.65
CDY01510	Canola	cytosol	59.27	61.64
KRH29720	Soybean	cytosol	37.7	61.31
CDX90430	Canola	cytosol	43.55	60.17
KRH14029	Soybean	cytosol	60.08	59.96
KRH74087	Soybean	mitochondrion	60.69	59.14
KRG88787	Soybean	cytosol	58.27	58.86
KRH65064	Soybean	endoplasmic reticulum	57.46	58.04
KRH23152	Soybean	cytosol, endoplasmic reticulum, mitochondrion	57.06	57.99
KRH59867	Soybean	endoplasmic reticulum	57.06	57.87
KRH48161	Soybean	cytosol	57.26	57.84
KRH41166	Soybean	cytosol	56.85	57.67
KRH29723	Soybean	cytosol	17.74	56.05
KRH24715	Soybean	endoplasmic reticulum	58.87	56.05
KRH75770	Soybean	plastid	47.38	54.15
KRH10186	Soybean	endoplasmic reticulum, extracellular, plastid	10.89	52.43

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:100793576	MapMan:11.3.2.1.5	MapMan:18.4.1.42	Gene3D:3.30.200.20
EMBL:ACUP02002860	EnsemblPlantsGene:GLYMA_05G070700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009742
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
UniProt:I1K117	InterPro:IPR000719	InterPro:IPR011990	EnsemblPlants:KRH57593	ProteinID:KRH57593	ProteinID:KRH57593.1
InterPro:Kinase-like_dom_sf	PFAM:PF07714	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF260	InterPro:Prot_kinase_dom
SUPFAM:SSF48452	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002339B13	:

Description

hypothetical protein

Coordinates

chr5:+:7473589..7479534

Molecular Weight (calculated)

55739.6 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.369

Length

496 amino acids

Sequence
(BLAST)

001: MGCLHSKTAH LHSPEDPPTA LPDSKKPDPG NGGDDVDQEC QVPAFKEYGL IELRRATNEF STDYIVSESG EKAPNVVYRG KLENNRLVAV KRFSKLSWPD
101: AQQFMAEAAG VGKVRHKRLV NLIGCCAEGD ERLLVAEYMP NDTLSKHLFH WDKQPLPWEM RVRVAYHVAQ ALDHCSLENR KIYHDLNAYR ILFDEDGDPR
201: LSSFGLMKNS RDGKSYSTNL AYTPPEFLRT GRIIPESVIY SYGTVLLDLL SGKHIPPSHA LDLIRGKNVL LLMDSSLEGQ YANDDATKLV ELASKCLQFE
301: ARERPEIKFL LTAVAPLQKQ KEVTSHVLMG LTKNTAVLPT MLSPLGKACA RMDLTAVHDI LLKTGYKDEE GAENELSFQE WTQQVQDILN TKKFGDIAFR
401: DKDFKNAIEY YSKLVVMMSV PSATVFARRA FSYLMNDQAE LALRDAMQAQ VCIPDWPTAF YLQALALSKL GMETDAHDML NDGAAFEAKR SNSWRG

Best Arabidopsis Sequence Match ( AT5G46570.1 )
(BLAST)

001: MGCLHSKTAN LPSSDDPSAP NKPESVNGDQ VDQEIQNFKE FELNELRKAT NGFSPSCIVS EGGEKAPNVV YRGKLEGNHL VAIKRFSRQS WPDAQQFVVE
101: ATGVGKLRNK RIVSLIGCCA EGDERLLVAE YMPNDTLSKH LFHWEKQPLP WDMRVRIADY IAEALDYCNI ENRKIYHDLN AYRILFDEEG DPRLSTFGLM
201: KNSRDGKSYS TNLAYTPPEF LRTGRVIPES VIFSYGTILL DLLSGKHIPP SHALDIIRGK NALLLMDSSL EGQYANDDAT KLVDLASKCL QSEAKDRPDT
301: KFLLSAVAPL QKQEEVASHV LMGLPKNTVI LPTMLSPLGK ACAKMDLATF HDILLKTGYR DEEGAENELS FQEWTQQVQE MLNTKKFGDI AFRDKDFKNS
401: IEYYSKLVGM MPVPSATVFA RRAFSYLMTD QQELALRDAM QAQVCIPEWP TAFYLQALAL SKLGMETDAQ DMLNDGAAYD AKRQNSWRC

Arabidopsis Description

BSK2Serine/threonine-protein kinase BSK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.