CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29720	Soybean	cytosol	53.89	86.23
VIT_06s0004g05810.t01	Wine grape	plastid	81.97	81.63
KRH24715	Soybean	endoplasmic reticulum	84.63	79.27
AT5G59010.1	Thale cress	cytosol	78.69	78.53
CDY33003	Canola	cytosol	78.48	78.0
Bra002599.1-P	Field mustard	cytosol	78.48	78.0
CDY02851	Canola	cytosol	77.87	77.71
KRH10186	Soybean	endoplasmic reticulum, extracellular, plastid	16.39	77.67
CDY32670	Canola	cytosol	77.66	77.51
Bra020340.1-P	Field mustard	plastid	75.61	77.36
KRH29723	Soybean	cytosol	24.8	77.07
CDY67218	Canola	cytosol	77.46	76.99
KRG88787	Soybean	cytosol	74.39	73.93
KRH48161	Soybean	cytosol	72.13	71.69
KRH65064	Soybean	endoplasmic reticulum	72.13	71.69
KRH59867	Soybean	endoplasmic reticulum	69.88	69.73
KRH75770	Soybean	plastid	61.48	69.12
KRH41166	Soybean	cytosol	68.24	68.1
KRH14029	Soybean	cytosol	60.66	59.56
KRH74087	Soybean	mitochondrion	60.66	58.15
KRH57593	Soybean	cytosol, endoplasmic reticulum, mitochondrion	57.99	57.06
KRH04312	Soybean	cytosol	57.38	56.22

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:100804210	MapMan:11.3.2.1.5	MapMan:18.4.1.42	Gene3D:3.30.200.20
UniProt:A0A0R4J549	EMBL:ACUP02008457	EnsemblPlantsGene:GLYMA_13G341100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:IPR011990	EnsemblPlants:KRH23152	ProteinID:KRH23152	ProteinID:KRH23152.1	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF18	InterPro:Prot_kinase_dom	SUPFAM:SSF48452
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001B6399F	:	:

Description

hypothetical protein

Coordinates

chr13:-:43292117..43296459

Molecular Weight (calculated)

55016.2 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.386

Length

488 amino acids

Sequence
(BLAST)

001: MGAGCSKLCL CWCPSNSKPN LHDLPDNENE KEESWVGFTE FTLDQLRSAT SSFSPDNIVS EHGEKAPNVV YKGRTEDDRL VAVKRFNKSA WPDPRQFLEE
101: ARAVGQLRNE RLANLVGCCC EGEERLLVAE FMPNETLSKH LFHWESQPMK WAMRLRVALY LAQALEYCSS KGRALYHDLN AYRVLFDQDG NPRLSCFGLM
201: KNSRDGRSYS TNLAFTPPEY LRTGRITRES VIYSFGTLLL DLLSGKHIPP SHALDLIRGK NFLMLVDSCL EGHISNDDGT EIVRLASRCL QYEPRERPNA
301: KSLVTALAPL QKETSVPSQV LLGIPDEITP SKEAVPLTPF GEACSRRDLT SIYEILETVG YKDDEDVANE LSFQVWTDQI QETLNSKKQG DSAFHARDFS
401: KAIECYTQFI DGGTMVSPTV YARRCFCYLM INMVQEALGD AMQAQSVSPT WPIAFYLQAV ALFSLGMDHD AEESLKDATT LETRKHRN

Best Arabidopsis Sequence Match ( AT5G59010.1 )
(BLAST)

001: MGPRCSKLSL CWWPTHLKST HNEASDLDNG TDDLPSFTEF SFDQLRAATC GFSTDSIVSE HGVKAPNVVY KGRLEDDRWI AVKRFNRSAW PDTRQFLEEA
101: KAVGQLRNER LANLIGFCCE GDERLLVAEF MPFETLSKHL FHWDSQPMKW SMRLRVALYL AQALEYCSSK GRALYHDLNA YRILFDQDGN PRLSCFGLMK
201: NSRDGKSYST NLAFTPPEYL RTGRVIPESV VYSFGTLLLD LLSGKHIPPS HALDLIRGKN FLMLMDSCLD GHFSNDDGTD LVRLASRCLQ YEARERPNVK
301: SLVSSLAPLQ KETDIPSHVL MGIPHGAASP KETTSLTPLG DACSRHDLTA IHEILEKVGY KDDEGVANEL SFQVWTDQIQ ETLNSKKQGD AAFKGKDFVT
401: AVECYTQFIE DGTMVSPTVF ARRCLCYLMS NMPQEALGDA MQAQVVSPEW PTAFYLQAAA LFSLGMDKDA CETLKDGTSL EAKKHNNRN

Arabidopsis Description

BSK5Serine/threonine-protein kinase BSK5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIL1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.