CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42321
KRH53813
KRH58443
KRH64131

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35230.1	KRH53813	AT4G39400.1	18653891
AT4G35230.1	KRH64131	AT4G39400.1	18653891
AT4G35230.1	KRH42321	AT5G46330.1	23532072
AT4G35230.1	KRH58443	AT5G46330.1	23532072

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14029	Soybean	cytosol	94.11	96.38
VIT_03s0038g03270.t01	Wine grape	cytosol	81.14	82.6
GSMUA_Achr11P...	Banana	cytosol	54.42	81.47
CDX69121	Canola	cytosol	80.16	80.63
CDX75483	Canola	cytosol	80.16	80.0
Bra011596.1-P	Field mustard	cytosol	80.35	79.88
AT4G35230.1	Thale cress	cytosol	80.35	79.88
CDX76321	Canola	cytosol	79.17	79.49
Bra020806.1-P	Field mustard	cytosol	79.17	79.49
CDY17529	Canola	cytosol	78.78	79.09
GSMUA_Achr5P11610_001	Banana	cytosol	76.42	77.49
Os10t0542800-01	Rice	cytosol, plasma membrane	15.13	74.76
GSMUA_Achr4P29650_001	Banana	cytosol	73.28	74.3
Zm00001d027523_P001	Maize	plasma membrane	74.26	73.83
Zm00001d048345_P003	Maize	plastid	73.87	73.73
GSMUA_Achr5P19040_001	Banana	plasma membrane	75.44	73.7
EER95565	Sorghum	plastid	74.46	73.45
HORVU1Hr1G052420.3	Barley	cytosol	36.35	73.12
HORVU4Hr1G081600.1	Barley	mitochondrion, plastid	73.48	72.62
Os03t0132800-01	Rice	plasma membrane	75.05	71.94
TraesCS4B01G328200.1	Wheat	plastid	73.87	71.89
GSMUA_Achr8P13240_001	Banana	cytosol, plastid	72.3	71.73
TraesCS1B01G217500.1	Wheat	plastid	74.07	71.67
TraesCS4D01G325200.1	Wheat	plastid	73.28	71.59
TraesCS1A01G203400.1	Wheat	plastid	73.67	71.56
TraesCS5A01G500000.1	Wheat	plastid	73.28	71.18
TraesCS1D01G206900.1	Wheat	plastid	73.48	70.97
EER94565	Sorghum	plastid	72.5	70.42
HORVU0Hr1G000450.1	Barley	plastid	38.11	69.29
HORVU1Hr1G052350.2	Barley	plastid	73.67	66.49
Zm00001d029785_P001	Maize	plastid	71.71	65.53
KRH29720	Soybean	cytosol	37.13	61.97
KRH65064	Soybean	endoplasmic reticulum	59.33	61.51
KRG88787	Soybean	cytosol	58.94	61.1
KRH48161	Soybean	cytosol	58.55	60.69
KRH57593	Soybean	cytosol, endoplasmic reticulum, mitochondrion	59.14	60.69
KRH23152	Soybean	cytosol, endoplasmic reticulum, mitochondrion	58.15	60.66
KRH04312	Soybean	cytosol	58.55	59.84
KRH59867	Soybean	endoplasmic reticulum	56.78	59.1
KRH41166	Soybean	cytosol	56.58	58.9
KRH75770	Soybean	plastid	49.51	58.06
KRH24715	Soybean	endoplasmic reticulum	57.56	56.24
GSMUA_Achr1P02160_001	Banana	cytosol	57.96	54.43
KRH29723	Soybean	cytosol	16.5	53.5
Bra034987.1-P	Field mustard	cytosol	16.5	51.85
KRH10186	Soybean	endoplasmic reticulum, extracellular, plastid	9.63	47.57
OQU78897	Sorghum	cytosol, golgi, plastid	29.27	40.27

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:100808907	MapMan:11.3.2.1.5	MapMan:18.4.1.42	MapMan:26.8.1.1.4
Gene3D:3.30.200.20	EMBL:ACUP02001295	EnsemblPlantsGene:GLYMA_02G310400	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009742	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	UniProt:I1JJV5	InterPro:IPR000719	InterPro:IPR011990	EnsemblPlants:KRH74087	ProteinID:KRH74087
ProteinID:KRH74087.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF41
InterPro:Prot_kinase_dom	SUPFAM:SSF48452	SUPFAM:SSF56112	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233777B	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:48337717..48347990

Molecular Weight (calculated)

57923.6 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.583

Length

509 amino acids

Sequence
(BLAST)

001: MGCCQSSMLL RVGERETHPE KEKEREKEKE QAYGNHQRQS EGGEGDGEKE VVDFSFSEFS LAELKAATNN FSSEYIVSES GEKAPNLVYK GRLQNQSRWI
101: AVKKFSKSAW PDPKQFVEEA SGVGKLRHPR LANLIGYCCD GDERLLVAEY MPNDTLAKHL FHWETQTIEW AMRLRVALYI AQALHYCSSE GRPLYHDLNA
201: YRVLFDQEGD PRLSCFGFMK NSRDGKSYST NLAYTPPEYL RNGRVTPESV IYSFGTVLLD LLSGKHIPPS HALDMIQGKN NMLLMDSHLE GKFSTEEATV
301: VVNLASKCLQ YEPRERPDTK DLVTTLAPLH TKPDVRSHIM LGIPKHEEVP STPQRPLSAM GEACSRMDLT AIHQILVATH YRDDEGTNEL SFQEWTQQMR
401: DMLEARKRGD YAFRDKDFKT AIDNYSQFID VGTMISPTVF ARRSLCYLLC DQPDPALRDA MQAQCVYPDW PTAFYMQSVA LAKLDMHKDA ADMLNEAAAL
501: EEKRQRGAR

Best Arabidopsis Sequence Match ( AT4G35230.1 )
(BLAST)

001: MGCCQSLFSG DNPLGKDGVQ PQPLSQNNHG GATTADNGGS GGASGVGGGG GGGGIPSFSE FSFADLKAAT NNFSSDNIVS ESGEKAPNLV YKGRLQNRRW
101: IAVKKFTKMA WPEPKQFAEE AWGVGKLRHN RLANLIGYCC DGDERLLVAE FMPNDTLAKH LFHWENQTIE WAMRLRVGYY IAEALDYCST EGRPLYHDLN
201: AYRVLFDEDG DPRLSCFGLM KNSRDGKSYS TNLAYTPPEY LRNGRVTPES VTYSFGTVLL DLLSGKHIPP SHALDMIRGK NIILLMDSHL EGKFSTEEAT
301: VVVELASQCL QYEPRERPNT KDLVATLAPL QTKSDVPSYV MLGIKKQEEA PSTPQRPLSP LGEACSRMDL TAIHQILVMT HYRDDEGTNE LSFQEWTQQM
401: KDMLDARKRG DQSFREKDFK TAIDCYSQFI DVGTMVSPTV FGRRSLCYLL CDQPDAALRD AMQAQCVYPD WPTAFYMQSV ALAKLNMNTD AADMLNEAAQ
501: LEEKRQRGGR GS

Arabidopsis Description

BSK1Probable serine/threonine-protein kinase At4g35230 [Source:UniProtKB/Swiss-Prot;Acc:Q944A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.