CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03532
EES12871
OQU86764

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35230.1	EES03532	AT4G39400.1	18653891
AT4G35230.1	OQU86764	AT4G39400.1	18653891
AT4G35230.1	EES12871	AT5G46330.1	23532072

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029785_P001	Maize	plastid	91.22	85.82
GSMUA_Achr11P...	Banana	cytosol	53.44	82.35
EER95565	Sorghum	plastid	79.96	81.2
GSMUA_Achr5P11610_001	Banana	cytosol	74.62	77.89
GSMUA_Achr4P29650_001	Banana	cytosol	72.52	75.7
GSMUA_Achr5P19040_001	Banana	plasma membrane	74.62	75.05
VIT_03s0038g03270.t01	Wine grape	cytosol	71.56	75.0
CDX69121	Canola	cytosol	72.14	74.7
CDX75483	Canola	cytosol	72.14	74.12
AT4G35230.1	Thale cress	cytosol	72.14	73.83
Bra011596.1-P	Field mustard	cytosol	71.95	73.63
Bra020806.1-P	Field mustard	cytosol	71.18	73.57
CDX76321	Canola	cytosol	71.18	73.57
KRH14029	Soybean	cytosol	69.47	73.24
CDY17529	Canola	cytosol	70.8	73.18
KRH74087	Soybean	mitochondrion	70.42	72.5
GSMUA_Achr8P13240_001	Banana	cytosol, plastid	70.61	72.12
EER94456	Sorghum	cytosol	57.63	59.8
EES11678	Sorghum	cytosol	55.15	58.98
GSMUA_Achr1P02160_001	Banana	cytosol	55.92	54.06
OQU90700	Sorghum	plastid	49.62	52.95
Bra034987.1-P	Field mustard	cytosol	14.31	46.3
OQU78897	Sorghum	cytosol, golgi, plastid	30.92	43.78

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	MapMan:11.3.2.1.5	MapMan:18.4.1.42	MapMan:26.8.1.1.4	Gene3D:3.30.200.20
EntrezGene:8062853	UniProt:C5WTJ2	ncoils:Coil	EnsemblPlants:EER94565	ProteinID:EER94565	ProteinID:EER94565.1
InterPro:EF_Hand_1_Ca_BS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009742	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:IPR011990	InterPro:Kinase-like_dom_sf	PFAM:PF07714	ScanProsite:PS00018	PFscan:PS50011	PANTHER:PTHR27001
PANTHER:PTHR27001:SF41	InterPro:Prot_kinase_dom	EnsemblPlantsGene:SORBI_3001G310700	SUPFAM:SSF48452	SUPFAM:SSF56112	unigene:Sbi.5365
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8302F	RefSeq:XP_002467567.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:59699678..59704361

Molecular Weight (calculated)

58321.7 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.421

Length

524 amino acids

Sequence
(BLAST)

001: MGCCRSSLRP GPHAAEKPPR HRPPPPPPTN NGPSFSLNAH QAAPPAPAPA RAAAGDVPVF AEFSLAELRA ATAGFAPQNI VSESGEKAPN LVYRGQLKAP
101: RGAPAPPRAI AVKKFAKLAW PDPKQFAEEA KGVGGLRHRR MANLIGYCCD GDERLLVAEF MPNDTLAKHL FHWENQSIEW AMRLRVAYYI SQALEYCSIK
201: GRPLYHDLNA YRVLFDENGD PRLSCFGLMK NSRDGKSYST NLAYTPPEYL RNGRVTPESV IFSFGTVLLD LLSGKRIPPS HALDIMRGRN IQAVMDSHLE
301: GNYSTEVATT LVNLASQCLQ YEPRDRPDIK KLVSILEPLQ TKSEVPSYVM LGIPKPVEES QAPPTPQHPL SPMGEACSRM DLTAIHQFLF TAHYSDDDGN
401: NELSFQEWTQ QMRDMLDARK RGDSAFKDKD FKAAIDCYSQ FVDVGTMMSP TIFARRSLCY LMCDQPDAAL RDAMQAQIVY PDWPTAFYMQ AVALSKLNMQ
501: SDAVDMLNEA SQLEEKRQKS TRVL

Best Arabidopsis Sequence Match ( AT4G35230.1 )
(BLAST)

001: MGCCQSLFSG DNPLGKDGVQ PQPLSQNNHG GATTADNGGS GGASGVGGGG GGGGIPSFSE FSFADLKAAT NNFSSDNIVS ESGEKAPNLV YKGRLQNRRW
101: IAVKKFTKMA WPEPKQFAEE AWGVGKLRHN RLANLIGYCC DGDERLLVAE FMPNDTLAKH LFHWENQTIE WAMRLRVGYY IAEALDYCST EGRPLYHDLN
201: AYRVLFDEDG DPRLSCFGLM KNSRDGKSYS TNLAYTPPEY LRNGRVTPES VTYSFGTVLL DLLSGKHIPP SHALDMIRGK NIILLMDSHL EGKFSTEEAT
301: VVVELASQCL QYEPRERPNT KDLVATLAPL QTKSDVPSYV MLGIKKQEEA PSTPQRPLSP LGEACSRMDL TAIHQILVMT HYRDDEGTNE LSFQEWTQQM
401: KDMLDARKRG DQSFREKDFK TAIDCYSQFI DVGTMVSPTV FGRRSLCYLL CDQPDAALRD AMQAQCVYPD WPTAFYMQSV ALAKLNMNTD AADMLNEAAQ
501: LEEKRQRGGR GS

Arabidopsis Description

BSK1Probable serine/threonine-protein kinase At4g35230 [Source:UniProtKB/Swiss-Prot;Acc:Q944A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.