Factsheet for PGSC0003DMT400004190

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46570.1	PGSC0003DMT400078676	AT2G22680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g01140.t01	Wine grape	cytosol	87.6	87.07
KRH57593	Soybean	cytosol, endoplasmic reticulum, mitochondrion	85.16	84.48
GSMUA_Achr11P...	Banana	cytosol	83.74	83.74
KRH04312	Soybean	cytosol	84.15	83.13
GSMUA_Achr4P12250_001	Banana	cytosol	84.15	82.8
GSMUA_Achr4P05600_001	Banana	cytosol	82.11	82.28
TraesCS1B01G192300.3	Wheat	cytosol	84.15	81.82
TraesCS1D01G194300.1	Wheat	cytosol	83.94	81.62
TraesCS1A01G190200.2	Wheat	cytosol	84.15	81.02
AT5G46570.1	Thale cress	cytosol	80.49	80.98
Os10t0571300-01	Rice	plasma membrane	83.74	80.47
CDY33480	Canola	cytosol	79.88	80.37
CDX77672	Canola	cytosol	79.88	80.37
Bra025014.1-P	Field mustard	cytosol	79.88	80.37
EER94456	Sorghum	cytosol	81.91	79.8
Zm00001d030021_P001	Maize	cytosol	80.69	78.61
CDX78818	Canola	cytosol	78.46	77.82
Bra013274.1-P	Field mustard	cytosol	78.05	77.42
CDY44497	Canola	cytosol	78.05	77.42
Zm00001d047053_P004	Maize	cytosol	81.5	75.38
HORVU1Hr1G049860.2	Barley	mitochondrion	84.15	71.63
PGSC0003DMT400025819	Potato	cytosol	62.8	62.05
CDY01511	Canola	cytosol	43.9	61.36
CDY01510	Canola	cytosol	58.13	59.96
CDX90430	Canola	cytosol	43.7	59.89
PGSC0003DMT400052467	Potato	mitochondrion	59.35	59.47
PGSC0003DMT400024464	Potato	cytosol	57.72	58.32
PGSC0003DMT400028622	Potato	cytosol, mitochondrion, plastid	56.1	56.21
PGSC0003DMT400012025	Potato	cytosol	55.08	55.76
PGSC0003DMT400078011	Potato	cytosol	56.5	51.67

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:102604642	MapMan:11.3.2.1.5	MapMan:18.4.1.42	Gene3D:3.30.200.20
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR011990	InterPro:Kinase-like_dom_sf
UniProt:M0ZN16	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400001670	PGSC:PGSC0003DMG400001670	EnsemblPlants:PGSC0003DMT400004190	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF260	InterPro:Prot_kinase_dom	SUPFAM:SSF48452	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294BF1D	RefSeq:XP_006354609.1	:	:	:

Description

Receptor protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400001670]

Coordinates

chr1:+:67962992..67970112

Molecular Weight (calculated)

55246.0 Da

IEP (calculated)

6.088

GRAVY (calculated)

-0.378

Length

492 amino acids

Sequence
(BLAST)

001: MGCLQSKTVN VQSPDKEPSQ DDSKTDLANG DQVDQDQVPA FKEFSLAELR AATNGFSSEL IVSESGEKAP NVVYRGKLRS NRLAAIKRFS RQSWPDAQQF
101: VAEAAGVGKV RHKRLVNLIG CCAEGDERLL VAEYMPNDTL SKHLFHWEKQ PLPWEMRVRV AYYIAQALDH CNAENRKIYH DLNAYRILFD EEGDPRLSSF
201: GLMKNSRDGK SYSTNLAYTP PEFLRTGRVI AESVVYSYGT VLLDLLSGKH IPPSHALDLI RGKNVLLLMD SSLEGQYANE DATALVELAS KCLQYEARDR
301: PEIKFILNAV EPLQKQKEAV SHVLMGLTKT PVVLPTMLSP LGKACARMDL TAVHDILLKT GYKDEEGAEN ELSFQEWTQQ VQDMLNTKKF GDIAFRDKDF
401: KNAVDYYSKL VSMMSVPSGT VFVRRALSYM MNGQPELALR DAMQAQVCLP EWPTAFYMQA LALSKLGMET DAQDMLNDGA SFEAKKLNSW RN

Best Arabidopsis Sequence Match ( AT5G46570.1 )
(BLAST)

001: MGCLHSKTAN LPSSDDPSAP NKPESVNGDQ VDQEIQNFKE FELNELRKAT NGFSPSCIVS EGGEKAPNVV YRGKLEGNHL VAIKRFSRQS WPDAQQFVVE
101: ATGVGKLRNK RIVSLIGCCA EGDERLLVAE YMPNDTLSKH LFHWEKQPLP WDMRVRIADY IAEALDYCNI ENRKIYHDLN AYRILFDEEG DPRLSTFGLM
201: KNSRDGKSYS TNLAYTPPEF LRTGRVIPES VIFSYGTILL DLLSGKHIPP SHALDIIRGK NALLLMDSSL EGQYANDDAT KLVDLASKCL QSEAKDRPDT
301: KFLLSAVAPL QKQEEVASHV LMGLPKNTVI LPTMLSPLGK ACAKMDLATF HDILLKTGYR DEEGAENELS FQEWTQQVQE MLNTKKFGDI AFRDKDFKNS
401: IEYYSKLVGM MPVPSATVFA RRAFSYLMTD QQELALRDAM QAQVCIPEWP TAFYLQALAL SKLGMETDAQ DMLNDGAAYD AKRQNSWRC

Arabidopsis Description

BSK2Serine/threonine-protein kinase BSK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.