Factsheet for VIT_02s0012g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0205g00030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46570.1	VIT_07s0205g00030.t01	AT2G22680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57593	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.49	89.31
KRH04312	Soybean	cytosol	88.69	88.15
PGSC0003DMT400004190	Potato	cytosol	87.07	87.6
GSMUA_Achr11P...	Banana	cytosol	86.67	87.2
AT5G46570.1	Thale cress	cytosol	83.84	84.87
GSMUA_Achr4P12250_001	Banana	cytosol	85.66	84.8
GSMUA_Achr4P05600_001	Banana	cytosol	83.03	83.71
Bra025014.1-P	Field mustard	cytosol	82.42	83.44
CDX77672	Canola	cytosol	82.42	83.44
CDY33480	Canola	cytosol	82.42	83.44
TraesCS1D01G194300.1	Wheat	cytosol	85.05	83.2
TraesCS1B01G192300.3	Wheat	cytosol	85.05	83.2
TraesCS1A01G190200.2	Wheat	cytosol	84.85	82.19
Os10t0571300-01	Rice	plasma membrane	84.65	81.84
EER94456	Sorghum	cytosol	83.23	81.58
Zm00001d030021_P001	Maize	cytosol	82.22	80.59
CDX78818	Canola	cytosol	80.4	80.24
Bra013274.1-P	Field mustard	cytosol	80.0	79.84
CDY44497	Canola	cytosol	80.0	79.84
Zm00001d047053_P004	Maize	cytosol	82.42	76.69
HORVU1Hr1G049860.2	Barley	mitochondrion	84.85	72.66
VIT_17s0000g08700.t01	Wine grape	extracellular, plasma membrane	8.48	70.0
CDY01511	Canola	cytosol	45.45	63.92
CDY01510	Canola	cytosol	61.01	63.31
CDX90430	Canola	cytosol	45.25	62.4
VIT_08s0007g01520.t01	Wine grape	mitochondrion, plastid	61.82	62.32
VIT_06s0004g05810.t01	Wine grape	plastid	61.01	61.63
VIT_18s0001g00180.t01	Wine grape	cytosol	62.42	60.83
VIT_03s0038g03270.t01	Wine grape	cytosol	61.21	60.6
VIT_15s0046g02900.t01	Wine grape	cytosol	59.8	60.29
VIT_02s0025g03550.t01	Wine grape	cytosol	58.99	59.84

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:100264404	wikigene:100264404	MapMan:11.3.2.1.5	MapMan:18.4.1.42
Gene3D:3.30.200.20	UniProt:A5C572	EMBL:AM482754	ProteinID:CAN83954	ProteinID:CAN83954.1	ProteinID:CBI33898
ProteinID:CBI33898.3	EMBL:FN596247	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009742
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	InterPro:IPR011990	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100264404	wikigene:LOC100264404	PFAM:PF07714
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF260	InterPro:Prot_kinase_dom	SUPFAM:SSF48452	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001524CE9	ArrayExpress:VIT_02s0012g01140	EnsemblPlantsGene:VIT_02s0012g01140	EnsemblPlants:VIT_02s0012g01140.t01
RefSeq:XP_002280602	RefSeq:XP_002280602.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:7149563..7159772

Molecular Weight (calculated)

55357.9 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.389

Length

495 amino acids

Sequence
(BLAST)

001: MGCFQSKTAH LHSPDDPSST PEPTAKPDSA NGDQSDQEHQ VPAFKEYGLS ELRKATNGFS SDHIVSESGE KAPNVVYRGK LDSNRLVAVK RFSKLSWPDA
101: QQFVAEAAGV GKVRHKRLVN LIGCCAEGDE RLLVAEYMPN DTLSKHLFHW DKQPLPWDMR VRVAYYIAQA LDHCNTENRK IYHDLNAYRV LFDEDGDPRL
201: SSFGLMKNSR DGKSYSTNLA YTPPEFLRTG RVIPESVIYS YGTVLLDLLS GKHIPPSHAL DLIRGKNVLL LMDSSLEGQY ANDDATKLVE LASKCLQSEA
301: RDRPDTNFLL TAVAPLQKQK EVASHVLMGL TKTTVVLPTM LSPLGKACAR MDLTAVHDIL LKTGYKDEEG AENELSFQEW TQQVQEMLNT KKFGDIAFRD
401: KDFKSAIDYY SKLVVMMPVP SATVFARRAL SYLMIGQAEL ALRDAMQAQV CIPEWPTAFY LQALALSKLG METDAQDMLN DGAAFEAKRH NSWRN

Best Arabidopsis Sequence Match ( AT5G46570.1 )
(BLAST)

001: MGCLHSKTAN LPSSDDPSAP NKPESVNGDQ VDQEIQNFKE FELNELRKAT NGFSPSCIVS EGGEKAPNVV YRGKLEGNHL VAIKRFSRQS WPDAQQFVVE
101: ATGVGKLRNK RIVSLIGCCA EGDERLLVAE YMPNDTLSKH LFHWEKQPLP WDMRVRIADY IAEALDYCNI ENRKIYHDLN AYRILFDEEG DPRLSTFGLM
201: KNSRDGKSYS TNLAYTPPEF LRTGRVIPES VIFSYGTILL DLLSGKHIPP SHALDIIRGK NALLLMDSSL EGQYANDDAT KLVDLASKCL QSEAKDRPDT
301: KFLLSAVAPL QKQEEVASHV LMGLPKNTVI LPTMLSPLGK ACAKMDLATF HDILLKTGYR DEEGAENELS FQEWTQQVQE MLNTKKFGDI AFRDKDFKNS
401: IEYYSKLVGM MPVPSATVFA RRAFSYLMTD QQELALRDAM QAQVCIPEWP TAFYLQALAL SKLGMETDAQ DMLNDGAAYD AKRQNSWRC

Arabidopsis Description

BSK2Serine/threonine-protein kinase BSK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.