Factsheet for VIT_18s0001g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025819	Potato	cytosol	86.81	88.55
Solyc04g082260.2.1	Tomato	plastid	86.22	87.95
VIT_03s0038g03270.t01	Wine grape	cytosol	84.25	85.6
VIT_17s0000g08700.t01	Wine grape	extracellular, plasma membrane	9.06	76.67
VIT_06s0004g05810.t01	Wine grape	plastid	62.2	64.49
VIT_08s0007g01520.t01	Wine grape	mitochondrion, plastid	62.2	64.36
VIT_02s0025g03550.t01	Wine grape	cytosol	60.04	62.5
VIT_02s0012g01140.t01	Wine grape	cytosol	60.83	62.42
VIT_15s0046g02900.t01	Wine grape	cytosol	59.65	61.71
CDX96069	Canola	cytosol, plastid	57.87	61.12
CDY01839	Canola	cytosol, plastid	57.87	61.12
Bra004246.1-P	Field mustard	cytosol, plastid	57.68	60.91
AT1G50990.1	Thale cress	cytosol	59.25	59.37
CDY26795	Canola	cytosol	52.17	56.87
CDY07880	Canola	cytosol	43.31	56.7
Bra037282.1-P	Field mustard	cytosol	51.77	56.44
CDY47487	Canola	cytosol	51.57	56.22
Bra013030.1-P	Field mustard	nucleus	50.39	55.05
CDY02219	Canola	cytosol	50.39	54.82
AT2G17090.1	Thale cress	cytosol	49.41	53.98
CDY66812	Canola	cytosol	12.4	53.85
CDX73221	Canola	cytosol	9.06	52.27

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	EntrezGene:100245381	wikigene:100245381	MapMan:11.3.2.1.5	MapMan:18.4.1.42
MapMan:26.8.1.1.4	Gene3D:3.30.200.20	EMBL:AM444260	ProteinID:CAN74078	ProteinID:CAN74078.1	ProteinID:CBI18875
ProteinID:CBI18875.3	UniProt:E0CQS1	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009742	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	InterPro:IPR000719	InterPro:IPR011990	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100245381	wikigene:LOC100245381
PFAM:PF00069	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF41	InterPro:Prot_kinase_dom	SUPFAM:SSF48452
SUPFAM:SSF56112	TIGR:TC58484	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015C8267	ArrayExpress:VIT_18s0001g00180	EnsemblPlantsGene:VIT_18s0001g00180
EnsemblPlants:VIT_18s0001g00180.t01	unigene:Vvi.7801	RefSeq:XP_002285926	RefSeq:XP_002285926.1	RefSeq:XP_002285927	RefSeq:XP_002285927.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:1204364..1214937

Molecular Weight (calculated)

56966.6 Da

IEP (calculated)

6.070

GRAVY (calculated)

-0.465

Length

508 amino acids

Sequence
(BLAST)

001: MGCCQSSLFK RTRSDKDRYP QTTGLNHTPP SNGTDAAAAG VGDGGEGAGG VPAFSEFSLA DLKAATNNFS SDFIVSESGE KAPNVVYKGR LQNRRWIAVK
101: KFTKLAWPDP KQFADEAWGV GKLRHRRLAN LIGYCCDGDE RLLVAEYMPN DTLAKHLFHW ENQTIEWAMR LRVALYIAEA LDYCSAEGRP LYHDLNAYRV
201: LFDENGDPRL SCFGMMKNSR DGKSYSTNLA YTPPEYLRNG RVTPESVIFS FGTVLLDLLS GKHIPPSHAL DMIRGKNIPL LMDSHLEGNF STEEATVVFE
301: LASQCLQYEP RERPSPRNLV ETLAPLQNKP DVPSYVMLGI PKHEEAPPTP QHPLSPMGDA CTRMDLTAIH QILVMTHYKD DEGTNELSFQ EWTQQMRDML
401: EARKRGDLAF RDKDFKTAID CYSQFIDVGT MVSPTVYARR SLCYLLCDQP DTALRDAMQA QCVYPDWSTA FYMQAVALAK LDMHKDAADM LNEAAALEEK
501: RQRGGRGS

Best Arabidopsis Sequence Match ( AT4G35230.1 )
(BLAST)

001: MGCCQSLFSG DNPLGKDGVQ PQPLSQNNHG GATTADNGGS GGASGVGGGG GGGGIPSFSE FSFADLKAAT NNFSSDNIVS ESGEKAPNLV YKGRLQNRRW
101: IAVKKFTKMA WPEPKQFAEE AWGVGKLRHN RLANLIGYCC DGDERLLVAE FMPNDTLAKH LFHWENQTIE WAMRLRVGYY IAEALDYCST EGRPLYHDLN
201: AYRVLFDEDG DPRLSCFGLM KNSRDGKSYS TNLAYTPPEY LRNGRVTPES VTYSFGTVLL DLLSGKHIPP SHALDMIRGK NIILLMDSHL EGKFSTEEAT
301: VVVELASQCL QYEPRERPNT KDLVATLAPL QTKSDVPSYV MLGIKKQEEA PSTPQRPLSP LGEACSRMDL TAIHQILVMT HYRDDEGTNE LSFQEWTQQM
401: KDMLDARKRG DQSFREKDFK TAIDCYSQFI DVGTMVSPTV FGRRSLCYLL CDQPDAALRD AMQAQCVYPD WPTAFYMQSV ALAKLNMNTD AADMLNEAAQ
501: LEEKRQRGGR GS

Arabidopsis Description

BSK1Probable serine/threonine-protein kinase At4g35230 [Source:UniProtKB/Swiss-Prot;Acc:Q944A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.