Factsheet for Solyc04g082260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025819	Potato	cytosol	99.2	99.2
VIT_18s0001g00180.t01	Wine grape	cytosol	87.95	86.22
Solyc09g011750.2.1	Tomato	mitochondrion	63.86	64.77
Solyc10g085000.1.1	Tomato	cytosol	60.24	61.1
AT1G50990.1	Thale cress	cytosol	60.64	59.57
CDX96069	Canola	cytosol, plastid	57.23	59.25
CDY01839	Canola	cytosol, plastid	57.23	59.25
Solyc11g064890.1.1	Tomato	cytosol	57.83	59.14
Bra004246.1-P	Field mustard	cytosol, plastid	57.03	59.04
Solyc12g099830.1.1	Tomato	cytosol	57.03	58.44
Solyc06g076600.1.1	Tomato	cytosol	57.83	57.26
CDY26795	Canola	cytosol	52.81	56.44
CDY07880	Canola	cytosol	43.57	55.93
Bra037282.1-P	Field mustard	cytosol	52.01	55.58
CDY47487	Canola	cytosol	51.81	55.36
Bra013030.1-P	Field mustard	nucleus	50.8	54.41
CDY02219	Canola	cytosol	50.8	54.18
AT2G17090.1	Thale cress	cytosol	49.6	53.12
CDY66812	Canola	cytosol	12.45	52.99
CDX73221	Canola	cytosol	9.04	51.14

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.10	MapMan:11.3.2.1.5	MapMan:18.4.1.42	MapMan:26.8.1.1.4	Gene3D:3.30.200.20
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009742	GO:GO:0009987	GO:GO:0016020
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719	InterPro:IPR011990
UniProt:K4BVV3	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF41
InterPro:Prot_kinase_dom	SUPFAM:SSF48452	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	EnsemblPlantsGene:Solyc04g082260.2	EnsemblPlants:Solyc04g082260.2.1
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002766494	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:65983883..65989724

Molecular Weight (calculated)

55639.1 Da

IEP (calculated)

6.162

GRAVY (calculated)

-0.404

Length

498 amino acids

Sequence
(BLAST)

001: MGCCQSSILK ELSSEKDQRH GVVNARASNG TGAGAAVGDG GVPVFSEFSL SELKAATNNF SSEFIVSESG EKAPNMVYKG RLQNRRWIAV KKFTKSAWPD
101: PKQFADEASG VGNLRHKRLA NLIGYCSDGD ERLLVAEYMP NDTLAKHLFH WENQTLEWAM RLRVALYIAE ALDYCSSEGR PLYHDLNAYR VLFDESGDPR
201: LSCFGLMKNS RDGKSYSTNL AYTPPEYLRN GRVTQESVVF SYGTVLLDLL SGKHIPPGHA LDMIRGKNIL LLMDSHLEGN FSTEEATVVF DLASRCLQYE
301: PRERPNTKDL VSTLGPLQSK PDVASHVMLG IPKSEEAPPT PQHPLSAMGD ACSRMDLTAI HQILVMTHYK DDELTNELSF QEWTQQMRDM LEARKRGDLA
401: FRDKDFKTAI DCYSQFVDVG TMVSPTVYAR RSLCYLMCDQ PDAALRDAMQ AQCVHPDWST AFYMQAVALS KLDMHKDAAD MLNEAAILEE KRRGGRAS

Best Arabidopsis Sequence Match ( AT4G35230.1 )
(BLAST)

001: MGCCQSLFSG DNPLGKDGVQ PQPLSQNNHG GATTADNGGS GGASGVGGGG GGGGIPSFSE FSFADLKAAT NNFSSDNIVS ESGEKAPNLV YKGRLQNRRW
101: IAVKKFTKMA WPEPKQFAEE AWGVGKLRHN RLANLIGYCC DGDERLLVAE FMPNDTLAKH LFHWENQTIE WAMRLRVGYY IAEALDYCST EGRPLYHDLN
201: AYRVLFDEDG DPRLSCFGLM KNSRDGKSYS TNLAYTPPEY LRNGRVTPES VTYSFGTVLL DLLSGKHIPP SHALDMIRGK NIILLMDSHL EGKFSTEEAT
301: VVVELASQCL QYEPRERPNT KDLVATLAPL QTKSDVPSYV MLGIKKQEEA PSTPQRPLSP LGEACSRMDL TAIHQILVMT HYRDDEGTNE LSFQEWTQQM
401: KDMLDARKRG DQSFREKDFK TAIDCYSQFI DVGTMVSPTV FGRRSLCYLL CDQPDAALRD AMQAQCVYPD WPTAFYMQSV ALAKLNMNTD AADMLNEAAQ
501: LEEKRQRGGR GS

Arabidopsis Description

BSK1Probable serine/threonine-protein kinase At4g35230 [Source:UniProtKB/Swiss-Prot;Acc:Q944A7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.