Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0149600-01 | Rice | nucleus | 17.81 | 7.81 |
| Os08t0517300-01 | Rice | plastid | 16.44 | 7.42 |
| Os06t0698859-01 | Rice | nucleus | 18.15 | 7.33 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | UniProt:A0A0P0X0Y6 | ProteinID:BAS99320.1 | InterPro:CCT_domain | ncoils:Coil |
| GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR010399 |
| InterPro:IPR010402 | InterPro:IPR013088 | EnsemblPlantsGene:Os06g0698900 | EnsemblPlants:Os06t0698900-01 | PFAM:PF00320 | PFAM:PF06200 |
| PFAM:PF06203 | ScanProsite:PS00344 | PFscan:PS50114 | PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF296 | SMART:SM00401 | SMART:SM00979 | SUPFAM:SSF57716 | InterPro:Tify_dom | UniParc:UPI0001C7C900 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : | : |
Description
GATA TRANSCRIPTION FACTOR 20Similar to GATA transcription factor 25. (Os06t0698900-01)
Coordinates
chr6:-:29366039..29370366
Molecular Weight (calculated)
31573.7 Da
IEP (calculated)
4.686
GRAVY (calculated)
-0.698
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MARFEEEHRA LGAEEEYEEE EDELEEEEEE MEEDEDAQHH EGVGGEVAVP MDAEAAAQLD PHGGMLAASG AVQPMASNQL TLSFQGEVYV FDSVSPDKVQ
101: AVLLLLGGRE LNPGLGSGAS SSAPYSKRLN FPHRVASLMR FREKRKERNF DKKIRYSVRK EVALRMQRNR GQFTSSKPKG DEATSELTAS DGSPNWGSVE
201: GRPPSAAECH HCGINAKATP MMRRGPDGPR TLCNACGLMW ANKGMLRDLS KAPPTPIQVV ASVNDGNGSA AAPTTEQEIP APATVNGHES ST
101: AVLLLLGGRE LNPGLGSGAS SSAPYSKRLN FPHRVASLMR FREKRKERNF DKKIRYSVRK EVALRMQRNR GQFTSSKPKG DEATSELTAS DGSPNWGSVE
201: GRPPSAAECH HCGINAKATP MMRRGPDGPR TLCNACGLMW ANKGMLRDLS KAPPTPIQVV ASVNDGNGSA AAPTTEQEIP APATVNGHES ST
001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ
Arabidopsis Description
GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.