Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G09250.4 | Thale cress | nucleus | 39.86 | 46.22 |
| KRH53937 | Soybean | nucleus | 34.06 | 44.76 |
| PGSC0003DMT400022353 | Potato | nucleus | 30.43 | 40.78 |
| Solyc02g061790.2.1 | Tomato | nucleus | 30.43 | 40.78 |
| VIT_07s0031g02500.t01 | Wine grape | nucleus | 26.09 | 34.95 |
| GSMUA_Achr8P30150_001 | Banana | nucleus | 25.36 | 33.33 |
| TraesCS5D01G308200.1 | Wheat | cytosol, mitochondrion, nucleus | 24.64 | 33.33 |
| TraesCS5A01G299800.1 | Wheat | mitochondrion | 24.64 | 32.69 |
| TraesCS5B01G301400.1 | Wheat | mitochondrion | 24.64 | 32.69 |
| Os02t0553600-01 | Rice | nucleus | 22.46 | 30.69 |
| EES05235 | Sorghum | nucleus | 21.74 | 29.7 |
| KRH64003 | Soybean | nucleus | 24.64 | 29.57 |
| HORVU5Hr1G079060.3 | Barley | cytosol, nucleus | 19.57 | 23.89 |
| AT4G10920.2 | Thale cress | nucleus | 21.01 | 17.58 |
| Zm00001d016803_P001 | Maize | nucleus | 18.84 | 14.05 |
| AT4G00980.1 | Thale cress | nucleus | 13.04 | 3.69 |
Protein Annotations
| Gene3D:2.30.31.10 | MapMan:35.1 | EntrezGene:830783 | UniProt:A0A178UFH2 | ProteinID:AED91362.1 | ArrayExpress:AT5G09240 |
| EnsemblPlantsGene:AT5G09240 | RefSeq:AT5G09240 | TAIR:AT5G09240 | RefSeq:AT5G09240-TAIR-G | EnsemblPlants:AT5G09240.2 | TAIR:AT5G09240.2 |
| Unigene:At.70268 | ncoils:Coil | UniProt:F4KCI8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003713 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0060261 | InterPro:IPR009044 |
| RefSeq:NP_850798.2 | ProteinID:OAO92369.1 | InterPro:PC4 | PFAM:PF02229 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020094 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR13215 |
| SUPFAM:SSF54447 | UniParc:UPI000034F320 | InterPro:ssDNA-bd_transcriptional_reg | : | : | : |
Description
SsDNA-binding transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:F4KCI8]
Coordinates
chr5:-:2873660..2874849
Molecular Weight (calculated)
16017.0 Da
IEP (calculated)
5.576
GRAVY (calculated)
-0.475
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MSENGKRKDE DVRASDDRDE SETHAPPKKV AKPADEIEDI FICNLDKNRR VFVRNCNGRI WIAIRQFFVK DGITLPCNSK QGISLSLEQV FTSLFHCLCL
101: PHVHMSCLLH ETFFLMQWND LRNHEEDIDK ALSELSEV
101: PHVHMSCLLH ETFFLMQWND LRNHEEDIDK ALSELSEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.