Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G299800.1 | Wheat | mitochondrion | 99.02 | 97.12 |
| TraesCS5B01G301400.1 | Wheat | mitochondrion | 88.24 | 86.54 |
| Os02t0553600-01 | Rice | nucleus | 73.53 | 74.26 |
| EES05235 | Sorghum | nucleus | 69.61 | 70.3 |
| HORVU5Hr1G079060.3 | Barley | cytosol, nucleus | 63.73 | 57.52 |
| GSMUA_Achr8P30150_001 | Banana | nucleus | 50.98 | 49.52 |
| KRH53937 | Soybean | nucleus | 50.0 | 48.57 |
| PGSC0003DMT400022353 | Potato | nucleus | 49.02 | 48.54 |
| Solyc02g061790.2.1 | Tomato | nucleus | 48.04 | 47.57 |
| VIT_07s0031g02500.t01 | Wine grape | nucleus | 43.14 | 42.72 |
| Bra009372.1-P | Field mustard | nucleus | 44.12 | 42.06 |
| CDX69917 | Canola | nucleus | 43.14 | 41.12 |
| CDY21570 | Canola | nucleus | 43.14 | 41.12 |
| CDY40729 | Canola | nucleus | 43.14 | 41.12 |
| CDY44791 | Canola | nucleus | 43.14 | 41.12 |
| Bra028642.1-P | Field mustard | nucleus | 43.14 | 41.12 |
| Zm00001d016803_P001 | Maize | nucleus | 65.69 | 36.22 |
| KRH64003 | Soybean | nucleus | 37.25 | 33.04 |
| AT5G09250.4 | Thale cress | nucleus | 38.24 | 32.77 |
| AT5G09240.2 | Thale cress | nucleus | 33.33 | 24.64 |
| TraesCS3D01G253600.1 | Wheat | nucleus | 32.35 | 17.28 |
Protein Annotations
| Gene3D:2.30.31.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003713 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR009044 | InterPro:PC4 | PFAM:PF02229 | PANTHER:PTHR13215 | SUPFAM:SSF54447 |
| EnsemblPlantsGene:TraesCS5D01G308200 | EnsemblPlants:TraesCS5D01G308200.1 | SEG:seg | InterPro:ssDNA-bd_transcriptional_reg | : | : |
Description
No Description!
Coordinates
chr5D:+:405154762..405157023
Molecular Weight (calculated)
11205.4 Da
IEP (calculated)
10.204
GRAVY (calculated)
-0.845
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLKGNKRFG GGGGQPPAKR QAAGKDGPSE ETDDGIVVAQ ISKNKRVAVR SWNGKVMVDM REFYEKDGKS LPTRKGISLS MDQWKILRDN IEAIDEAIKE
101: NT
101: NT
001: MSSRGKRKDE DVRASDDESE THAPAKKVAK PADDSDQSDD IVVCNISKNR RVSVRNWNGK IWIDIREFYV KDGKTLPGKK GISLSVDQWN TLRNHAEDIE
101: KALSDLS
101: KALSDLS
Arabidopsis Description
KIWIssDNA-binding transcriptional regulator [Source:TAIR;Acc:AT5G09250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.