CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004895.1-P	Field mustard	mitochondrion	98.54	98.54
CDY18936	Canola	mitochondrion, plastid	90.19	90.38
CDY20454	Canola	mitochondrion	55.11	86.84
AT2G45270.1	Thale cress	plastid	82.67	82.5
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	67.22	71.08
VIT_15s0048g00390.t01	Wine grape	mitochondrion	67.64	69.23
PGSC0003DMT400018067	Potato	mitochondrion, plastid	67.64	69.08
HORVU3Hr1G029020.4	Barley	plastid	62.0	64.57
TraesCS3D01G149500.1	Wheat	plastid	61.8	64.49
TraesCS3B01G166200.1	Wheat	plastid	61.8	64.49
Os12t0485000-02	Rice	plastid	62.0	64.43
OQU86762	Sorghum	plastid	63.05	64.39
TraesCS3A01G133300.1	Wheat	plastid	61.59	64.27
TraesCS5B01G082600.1	Wheat	plastid	61.17	63.7
TraesCS5A01G076800.1	Wheat	plastid	60.33	62.83
TraesCS5B01G083500.1	Wheat	plastid	60.33	62.83
GSMUA_Achr10P...	Banana	plastid	38.83	62.21
TraesCS5D01G090000.1	Wheat	plastid	60.54	60.29
Zm00001d040583_P001	Maize	cytosol, plastid	40.92	56.0
Zm00001d040582_P002	Maize	plastid	24.01	54.5
Os01t0295900-01	Rice	mitochondrion	20.88	50.76
KRH76215	Soybean	cytosol	32.15	47.53
CDX82960	Canola	cytosol, mitochondrion	17.75	24.08
CDX79172	Canola	cytosol	18.37	20.8
CDY67122	Canola	endoplasmic reticulum, extracellular	5.64	19.42

Protein Annotations

KEGG:00564+2.3.1.23	MapMan:16.6.2.3	Gene3D:3.30.420.40	GO:A0A078CD34	EnsemblPlants:CDX74720	ProteinID:CDX74720
ProteinID:CDX74720.1	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00116682001	InterPro:Gcp-like_dom
InterPro:KAE1/TsaD	HAMAP:MF_01445	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6
MetaCyc:PWY-5353	MetaCyc:PWY-5368	MetaCyc:PWY-5995	MetaCyc:PWY-6433	MetaCyc:PWY-6803	MetaCyc:PWY-6958
MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470	MetaCyc:PWY-7618	SUPFAM:SSF53067	TIGRFAMs:TIGR00329
TIGRFAMs:TIGR03723	InterPro:TsaD	UniParc:UPI0004EEC712	SEG:seg	:	:

Description

BnaA05g04660D

Coordinates

chrLK031802:+:318128..320739

Molecular Weight (calculated)

52443.9 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.180

Length

479 amino acids

Sequence
(BLAST)

001: MVRRFLTLSP AISRLNLNPG IFLAASPSLR LQRQNLKPKI SLISSSSAST FQRTRAYTTR TRVSSSLPRS ESWKLDDDGL VVLGIETSCD DTAAAVVRGN
101: GEILSQVISS QAELLAQYGG VAPKQAEEAH SRVIDKVVQD ALDRANLTEK DLSAVAVTIG PGLGLCLRVG VQKARRVAGA FNLPIVGVHH MEAHALVARL
201: VEHELSFPFM ALLISGGHNI IVLAHELGQY TQLGTTVDDA IGEAFDKTAK WLGLDLRRSG GPAVEELALE GDSKSVMFNV PMKNHKDCNF SYAGLKTQVR
301: LAIEAREIDA KCPVSSATKE DRRNRADIAA SFQRVAVLHL EEKCERAIDW ALKLEPCIKH MVVSGGVASN QYVRSRLNNI VENKNLKLVC PPPSLCTDNG
401: VMVAWTGLEH FRVGRFDPPP PAIEPDDYVY DLRPRWPLGE EYAQGRSEAR SLRTARVHPS LTSIIRAADS LHQQTQTSQ

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.