Factsheet for TraesCS5B01G083500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G082600.1	Wheat	plastid	95.87	95.87
TraesCS5A01G076800.1	Wheat	plastid	94.57	94.57
TraesCS3B01G166200.1	Wheat	plastid	91.96	92.16
TraesCS5D01G090000.1	Wheat	plastid	94.57	90.44
Os12t0485000-02	Rice	plastid	81.52	81.34
OQU86762	Sorghum	plastid	81.09	79.53
KRH65326	Soybean	plastid	63.91	66.07
Zm00001d040583_P001	Maize	cytosol, plastid	50.22	66.0
GSMUA_Achr10P...	Banana	plastid	41.3	63.55
CDY20454	Canola	mitochondrion	41.96	63.49
VIT_15s0048g00390.t01	Wine grape	mitochondrion	63.91	62.82
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	60.65	61.59
CDY18936	Canola	mitochondrion, plastid	63.04	60.67
CDX74720	Canola	mitochondrion, plastid	62.83	60.33
Bra004895.1-P	Field mustard	mitochondrion	62.39	59.92
PGSC0003DMT400018067	Potato	mitochondrion, plastid	60.87	59.7
Os01t0295900-01	Rice	mitochondrion	25.43	59.39
AT2G45270.1	Thale cress	plastid	61.96	59.38
KRH76215	Soybean	cytosol	31.52	44.75
KRH65783	Soybean	nucleus	13.04	31.58
TraesCS1B01G143400.1	Wheat	plastid	19.35	23.36

Protein Annotations

MapMan:16.6.2.3	Gene3D:3.30.420.40	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Gcp-like_dom
InterPro:KAE1/TsaD	HAMAP:MF_01445	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6
SUPFAM:SSF53067	SignalP:SignalP-noTM	TIGRFAMs:TIGR00329	TIGRFAMs:TIGR03723	EnsemblPlantsGene:TraesCS5B01G083500	EnsemblPlants:TraesCS5B01G083500.1
InterPro:TsaD	TIGR:cd00012	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:105688882..105700722

Molecular Weight (calculated)

50088.3 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.084

Length

460 amino acids

Sequence
(BLAST)

001: MVFTLLPALW PPVSRATAFL LRTPPKPFRS QHLLFRSLLT SASSPSTSPI HRSLVTMASA GIPTRRDLLM LGIETSCDDT AAAVVRGDGE ILSQAISSQS
101: DLLVKWGGVA PKMAEEAHAL AIDQVVQKAL DDANVSESDL SAVAVTIGPG LSLCLRVGVH KARKIAKVFG LPIVGVHHME AHALVSRLVN KDLNYPFLAL
201: LISGGHNLLV LAQNLGEYVQ LGTTIDDAIG EAYDKAARWL GLDIRKGGGP ALEELALEGD PNSINFTVPL RQHKDCNFSY AGLKTQVRLT IESRNLCTDD
301: IPISSATEED RQLRANIAAS FQRIAVLHLE DRCQRAVEWA LKMKPSIKNF VVSGGVASNQ YVRTRLNHIA EKNGLQLVSP PPSLCTDNGV MIAWTGIEHF
401: VAGRFEDPPP ADEPDDMQYD LRPRWPLGEE YSEGRSVSRS LKTARIHPSL TSMTQSSLHK

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.