CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74720	Canola	mitochondrion, plastid	90.38	90.19
CDY20454	Canola	mitochondrion	54.39	85.53
AT2G45270.1	Thale cress	plastid	83.26	82.92
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	67.57	71.3
PGSC0003DMT400018067	Potato	mitochondrion, plastid	68.2	69.51
VIT_15s0048g00390.t01	Wine grape	mitochondrion	67.57	69.02
Os12t0485000-02	Rice	plastid	62.34	64.64
OQU86762	Sorghum	plastid	63.39	64.61
TraesCS3A01G133300.1	Wheat	plastid	61.51	64.05
TraesCS3D01G149500.1	Wheat	plastid	61.3	63.83
TraesCS3B01G166200.1	Wheat	plastid	61.3	63.83
HORVU3Hr1G029020.4	Barley	plastid	61.3	63.7
TraesCS5B01G082600.1	Wheat	plastid	61.09	63.48
TraesCS5B01G083500.1	Wheat	plastid	60.67	63.04
GSMUA_Achr10P...	Banana	plastid	39.33	62.88
TraesCS5A01G076800.1	Wheat	plastid	60.46	62.83
TraesCS5D01G090000.1	Wheat	plastid	60.46	60.08
Zm00001d040583_P001	Maize	cytosol, plastid	41.0	56.0
Zm00001d040582_P002	Maize	plastid	24.06	54.5
Os01t0295900-01	Rice	mitochondrion	20.5	49.75
KRH76215	Soybean	cytosol	32.43	47.84
CDX82960	Canola	cytosol, mitochondrion	18.41	24.93
CDX79172	Canola	cytosol	19.25	21.75
CDY67122	Canola	endoplasmic reticulum, extracellular	5.65	19.42

Protein Annotations

KEGG:00564+2.3.1.23	MapMan:16.6.2.3	Gene3D:3.30.420.40	GO:A0A078G0X6	UniProt:A0A078G0X6	EnsemblPlants:CDY18936
ProteinID:CDY18936	ProteinID:CDY18936.1	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006508	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872
GO:GO:0061711	EnsemblPlantsGene:GSBRNA2T00006145001	InterPro:Gcp-like_dom	InterPro:KAE1/TsaD	HAMAP:MF_01445	PFAM:PF00814
PRINTS:PR00789	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6	MetaCyc:PWY-5353	MetaCyc:PWY-5368	MetaCyc:PWY-5995
MetaCyc:PWY-6433	MetaCyc:PWY-6803	MetaCyc:PWY-6958	MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470
MetaCyc:PWY-7618	SUPFAM:SSF53067	TIGRFAMs:TIGR00329	TIGRFAMs:TIGR03723	InterPro:TsaD	UniParc:UPI0004EE1CA2
SEG:seg	:	:	:	:	:

Description

BnaC04g04140DProbable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078G0X6]

Coordinates

chrLK032090:-:498149..500831

Molecular Weight (calculated)

52558.1 Da

IEP (calculated)

9.205

GRAVY (calculated)

-0.207

Length

478 amino acids

Sequence
(BLAST)

001: MVRLFHTLSP AISRLNFIHP RIFLAASPSI RLQRNHVHNK LKPKISPSSS SKFQRTRAYS TTTRVSSLTK RESWKLDDDG LVVLGIETSC DDTAAAVVRG
101: NGEILSQVIS SQAELLAQYG GVAPKQAEEA HSRVIDKVVQ DALDRANLTE KDLSAVAVTI GPGLGLCLRV GVQKARRVAG AFNLPIVGVH HMEAHALVAR
201: LVEQDLSFPF MALLISGGHN IIVLAHELGQ YTQLGTTVDD AIGEAFDKTA KWLGLDLRRS GGPAVEELAL EGDSKSVMFN VPMKNHKDCN FSFAGLKTQV
301: RLAIEARKID AKCPVSSATR EDRRNRADIA ASFQRVAVLH LEEKCERAID WALKLEPSIK HMVVSGGVAS NQYVRSRLNN IVENKNLKLV CPPPSLCTDN
401: GVMVAWTGLE HFRVGRFDPP PPAIEPDDYV YDLRPRWPLG EEYAQGRSEA RSLRTARVHP SLTSIIRAAD SLQQQTQT

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.