Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G302400.1 | Wheat | cytosol | 35.29 | 24.0 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 34.8 | 23.91 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 31.37 | 20.85 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 14.22 | 14.87 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G194100.1 | EnsemblPlantsGene:TraesCS6B01G194100 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000571 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 | PFAM:PF00642 |
| PFscan:PS50103 | SMART:SM00356 | SUPFAM:SSF90229 | MapMan:15.5.16 | : | : |
Description
No Description!
Coordinates
chr6B:-:228977544..228978959
Molecular Weight (calculated)
22140.2 Da
IEP (calculated)
8.311
GRAVY (calculated)
-0.688
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTPDPDTP PRVEERRIAY SKESLLSVRE ACRDKLPAGI HACKREVEAA SLMWDSEPRG GSEPPRTRAG CKSKKIDKIC TRFFSAGDCP FGEDCRFLHR
101: VPSGHQEPDQ AVAKKMSKLD LGGDPAPATV KTRLCKNHGA PEGCKWGERC HFAHGDGELG KPMGPGSSFK TRLCVSFVAG GSCAFAGRCH FAHGDDELRR
201: PDAS
101: VPSGHQEPDQ AVAKKMSKLD LGGDPAPATV KTRLCKNHGA PEGCKWGERC HFAHGDGELG KPMGPGSSFK TRLCVSFVAG GSCAFAGRCH FAHGDDELRR
201: PDAS
001: MFATEMESIS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY VPGGYNAAAQ MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA
101: SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG
201: DRCHFAHGES ELRRSGIA
101: SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG
201: DRCHFAHGES ELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.