Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07001 | Canola | nucleus | 95.54 | 95.93 |
| AT2G39340.1 | Thale cress | nucleus | 81.34 | 79.72 |
| CDX74854 | Canola | nucleus | 80.12 | 79.56 |
| CDY44640 | Canola | nucleus | 80.63 | 78.95 |
| VIT_13s0067g03720.t01 | Wine grape | plastid | 31.34 | 61.31 |
| KRG92986 | Soybean | nucleus | 51.32 | 50.3 |
| KRH36229 | Soybean | nucleus | 50.91 | 49.7 |
| Solyc05g054910.2.1 | Tomato | nucleus | 44.83 | 45.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.7 | 43.63 |
| Os05t0462600-01 | Rice | mitochondrion | 36.51 | 43.11 |
| VIT_13s0067g03680.t01 | Wine grape | nucleus | 17.34 | 42.96 |
| HORVU1Hr1G071780.21 | Barley | nucleus | 40.57 | 41.45 |
| TraesCS1D01G286500.8 | Wheat | nucleus | 40.57 | 41.45 |
| TraesCS1B01G297000.5 | Wheat | nucleus | 40.06 | 40.76 |
| TraesCS1A01G287600.8 | Wheat | nucleus | 39.76 | 40.45 |
| OQU87820 | Sorghum | nucleus | 38.44 | 40.45 |
| Os01t0836400-02 | Rice | nucleus | 36.51 | 39.39 |
| OQU78144 | Sorghum | nucleus | 39.35 | 38.8 |
| Zm00001d010546_P003 | Maize | nucleus | 40.26 | 38.39 |
| TraesCS3A01G354400.3 | Wheat | nucleus | 40.37 | 36.85 |
| Zm00001d003061_P001 | Maize | nucleus | 4.56 | 36.59 |
| TraesCS3D01G348300.1 | Wheat | cytosol | 40.26 | 35.86 |
| Zm00001d038393_P012 | Maize | nucleus | 37.22 | 35.74 |
| TraesCS3B01G387400.1 | Wheat | nucleus | 40.16 | 35.33 |
| HORVU3Hr1G087140.16 | Barley | nucleus, plastid | 39.66 | 33.25 |
| HORVU1Hr1G029080.1 | Barley | extracellular | 5.17 | 30.0 |
Protein Annotations
| EnsemblPlants:CDX93271 | EnsemblPlantsGene:GSBRNA2T00155229001 | Gene3D:1.25.40.990 | InterPro:IPR000717 | InterPro:PCI_dom | InterPro:SAC3/GANP/THP3 |
| PANTHER:PTHR12436 | PANTHER:PTHR12436:SF28 | PFAM:PF03399 | PFscan:PS50250 | ProteinID:CDX93271 | ProteinID:CDX93271.1 |
| SEG:seg | UniParc:UPI0004EE1279 | MapMan:16.11.2.1 | : | : | : |
Description
BnaC04g46250D
Coordinates
chrLK031875:-:671082..676474
Molecular Weight (calculated)
108437.0 Da
IEP (calculated)
7.020
GRAVY (calculated)
-0.779
Length
986 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQGGNTQTV APLDPNPIEK RYGVEGSQVQ TSPYQYSTGS DAASWTTHSV DNQVVQQNGN YSNSNYYHPQ PPVPATGNVQ ETSSSTSGTV NVAQDYSAYT
101: PYQTPSDLQN YSNTGYTNYY SGCYQQQQPS QPYTQPVGAY QNTGAPYSSF QNPGSYAGTA SYSGTYYNPA DYQTTTGGYQ STAYNSQTAG GYVNQTPTSS
201: NQGNYTSNPY QNYTPDAANI HSATTATATP VHYQQNYQQW PGYYSQTEVP CAPGTENLPA TSAFSQSFPV AGGVASEMPA SNGQPAPSYA QNWRQETDSS
301: QPPPQQPAAA VSASNNAYWM HQTPSQQAHY PVPPQNHYQS PLETKPLYET PIQGHQRATY PQELNSQASI HQAPLGYRQP TQTTPSVDTQ RVSKIQIPTN
401: PRIASNLPSG YTKMNKERSP AGATQTPAYV SVSMSNPKGH TSAMPEPGTF PKALCGFVER AFARCKDDKE KASCQAALKK IITQATNDGT INTRDWDIEP
501: LSTVLNTDVT NTESSSAPIS SLQNKSPTRR PKSRWEPIVE SKPFVKPAST FTSGVKFGGW NHPNVNNKKS SETFQKVDAV TGSKPTYFAQ NSAKKSFQRP
601: VKRQRFAGGA IDDEESSDSE KELTPYYSSA MSLASSADEK KRRDSRSKRF EKVQGHSRGN DIPKPKISNV RRGTALRLGE VLDESCGSRA VEDMDWDALT
701: VKGTCQEIEK RYLRLTSAPD PTTVRPEDVL EKALSMVQDS PKNYLYKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARFAL EAGDLTEYNQ CLSQLKILYA
801: EGIEGCTLEF AAYSLLYITL HSNNNRELLS SMSRLSKEAK GDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL YVEKMRYKAV TFISRSCRPS
901: IPVSYLAQVL GFAGTSSEGT GEKENDGMEE CSEWLKAHGA SLIADSNGDM VLDTKASSTS LFMPEPEDAV AHGDRYLDVN DFFTRT
101: PYQTPSDLQN YSNTGYTNYY SGCYQQQQPS QPYTQPVGAY QNTGAPYSSF QNPGSYAGTA SYSGTYYNPA DYQTTTGGYQ STAYNSQTAG GYVNQTPTSS
201: NQGNYTSNPY QNYTPDAANI HSATTATATP VHYQQNYQQW PGYYSQTEVP CAPGTENLPA TSAFSQSFPV AGGVASEMPA SNGQPAPSYA QNWRQETDSS
301: QPPPQQPAAA VSASNNAYWM HQTPSQQAHY PVPPQNHYQS PLETKPLYET PIQGHQRATY PQELNSQASI HQAPLGYRQP TQTTPSVDTQ RVSKIQIPTN
401: PRIASNLPSG YTKMNKERSP AGATQTPAYV SVSMSNPKGH TSAMPEPGTF PKALCGFVER AFARCKDDKE KASCQAALKK IITQATNDGT INTRDWDIEP
501: LSTVLNTDVT NTESSSAPIS SLQNKSPTRR PKSRWEPIVE SKPFVKPAST FTSGVKFGGW NHPNVNNKKS SETFQKVDAV TGSKPTYFAQ NSAKKSFQRP
601: VKRQRFAGGA IDDEESSDSE KELTPYYSSA MSLASSADEK KRRDSRSKRF EKVQGHSRGN DIPKPKISNV RRGTALRLGE VLDESCGSRA VEDMDWDALT
701: VKGTCQEIEK RYLRLTSAPD PTTVRPEDVL EKALSMVQDS PKNYLYKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARFAL EAGDLTEYNQ CLSQLKILYA
801: EGIEGCTLEF AAYSLLYITL HSNNNRELLS SMSRLSKEAK GDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL YVEKMRYKAV TFISRSCRPS
901: IPVSYLAQVL GFAGTSSEGT GEKENDGMEE CSEWLKAHGA SLIADSNGDM VLDTKASSTS LFMPEPEDAV AHGDRYLDVN DFFTRT
0001: MNHGGNTQAV APMDPNSIEN RYGVDGSQTQ KYSYQYSTGS ESAPWTGHSV ENQAVENGNY SNSNYYHPQP TGPATGNVQE IPNTVSFTIS STSGTANVAQ
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
0101: DYSGYTPYQT SSDPHNYSNT GYSNYYSGYQ QQPSQSYPQP VGAYQNTGAP QPLSSFQNPG SYAGTPSYSG TYYNPADYQT AGGYQSTNYN NQTAGSYPST
0201: NYSNQTPASN QGNYTDYTSN PYQNYTPDAA NTHSSTIATT PPVHYQQNYQ QWTEYYSQTE VPCAPGTEKL STPTTSAYSQ SFPVPGVTSE MPASNSQPAP
0301: SYVQPWRPET DSSHPPSQQP GAAVSTSNDT YWMHQAPSLQ AHHPVPPQNN YQSPLETKPL YETPFQGHQR ATYPQEMNSQ SSFHQAPLGY RQPTQTAPLV
0401: DSQRVSKVQI PTNPRIASNL PSGFTKMDKD STAASAAQAP AYVSVSMPKP KDHTTAMSDP GTFPKSLRGF VERAFARCKD DKEKESCEVA LRKIVKKAKE
0501: DNTLYTRDWD TEPLSTVTTT NVTNSESSSA QLSSLQNKSP TRRPKSRWEP LVEGKPFVKP ASTFSSAVKF GVWNHQNENN KKSSESFQKV DAATGFKPTY
0601: SGQNSAKKSF QRPVKRQRFS GGAATAIDDE ASSDSDKDLT PYYSSAMALA GSAEEKKRRD SRSKRFEKIQ GHSRGNDLTK PKNANVGNLH SRRATALRLS
0701: KVFDESGSRA VEDIDWDALT VKGTCQEIEK RYLRLTSAPD PATVRPEDVL EKALIMVQDS QKNYLFKCDQ LKSIRQDLTV QRIHNHLTAK VYETHARLAL
0801: EAGDLPEYNQ CLSQLKTLYA EGVEGCSLEF AAYSLLYITL HSNNNRELLS SMSRLSEEDK KDEAVRHALS VRAAVTSGNY VMFFRLYKTA PNMNSCLMDL
0901: YVEKMRYKAV NFMSRSCRPT IPVSYIVQVL GFTGAASEGT DEKETDGMED CLEWLKTHGA NIITDSNGDM LLDTKATSTS LFMPEPEDAV AHGDRNLDVN
1001: DFFTRT
Arabidopsis Description
SAC3ASAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.