Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g04360.t01 | |
| VIT_11s0016g02290.t01 | |
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65650.1 | VIT_18s0072g01030.t01 | AT1G35670.1 | 19130088 |
| AT5G16310.1 | VIT_03s0038g04360.t01 | AT1G71230.1 | 21798944 |
| AT5G16310.1 | VIT_11s0016g02290.t01 | AT2G19560.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P00030_001 | Banana | cytosol | 84.43 | 90.68 |
| KRG92573 | Soybean | cytosol, nucleus | 90.12 | 90.12 |
| PGSC0003DMT400052269 | Potato | cytosol | 89.22 | 89.22 |
| KRH34213 | Soybean | cytosol | 89.22 | 89.22 |
| Solyc09g018730.2.1 | Tomato | cytosol, nucleus | 83.23 | 88.25 |
| AT1G65650.1 | Thale cress | cytosol | 78.14 | 79.09 |
| GSMUA_AchrUn_... | Banana | cytosol | 61.38 | 78.54 |
| Bra004123.1-P | Field mustard | cytosol | 76.95 | 78.12 |
| CDY07458 | Canola | cytosol | 76.95 | 78.12 |
| CDY39276 | Canola | cytosol | 76.95 | 78.12 |
| Os02t0180100-01 | Rice | nucleus | 67.66 | 68.69 |
| AT5G16310.1 | Thale cress | cytosol | 67.37 | 67.37 |
| CDX70685 | Canola | cytosol | 65.27 | 66.26 |
| CDX78681 | Canola | cytosol | 66.77 | 66.17 |
| EES14068 | Sorghum | cytosol | 65.27 | 65.86 |
| TraesCS6D01G137100.1 | Wheat | cytosol | 64.07 | 65.24 |
| TraesCS6B01G176100.1 | Wheat | cytosol | 63.77 | 64.94 |
| TraesCS6A01G147800.1 | Wheat | cytosol | 63.77 | 64.94 |
| EER95226 | Sorghum | cytosol | 64.07 | 64.65 |
| HORVU6Hr1G029150.7 | Barley | cytosol | 61.98 | 62.92 |
| Zm00001d049911_P001 | Maize | cytosol | 57.19 | 61.22 |
| Zm00001d031894_P005 | Maize | cytosol | 63.47 | 59.72 |
| HORVU6Hr1G083540.21 | Barley | plastid | 39.52 | 42.17 |
| HORVU5Hr1G105430.16 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 29.94 | 31.75 |
Protein Annotations
| Gene3D:1.20.58.860 | EntrezGene:100251772 | wikigene:100251772 | MapMan:19.2.2.1.2.1 | MapMan:19.2.2.3.2.1 | MapMan:19.2.6.2.3 |
| Gene3D:3.40.532.10 | UniProt:A5AU65 | EMBL:AM435743 | MEROPS:C12.005 | MEROPS:C12.A01 | ProteinID:CAN60599 |
| ProteinID:CAN60599.1 | ProteinID:CCB60369 | ProteinID:CCB60369.1 | ncoils:Coil | EMBL:FN596506 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | InterPro:IPR036959 | EntrezGene:LOC100251772 | wikigene:LOC100251772 | PFAM:PF01088 | PIRSF:PIRSF038120 |
| PRINTS:PR00707 | PANTHER:PTHR10589 | PANTHER:PTHR10589:SF30 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C12_UCH | InterPro:Peptidase_C12_UCH_sf |
| SUPFAM:SSF54001 | TIGR:TC58511 | UniParc:UPI000151F50E | InterPro:Ubiquitinyl_hydrolase_UCH37 | ArrayExpress:VIT_04s0044g02040 | EnsemblPlantsGene:VIT_04s0044g02040 |
| EnsemblPlants:VIT_04s0044g02040.t01 | unigene:Vvi.1514 | RefSeq:XP_002262954 | RefSeq:XP_002262954.1 | SEG:seg | : |
Description
Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A5AU65]
Coordinates
chr4:+:23831996..23843565
Molecular Weight (calculated)
38430.4 Da
IEP (calculated)
6.529
GRAVY (calculated)
-0.444
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDLDSLNH LRPVYGLIFL FKWRPGEKDD RLVIKDPNPN LFFASQVINN ACATQAILSI LMNCPDVDIG
101: PELSMLKEFT KNFPPELKGL AINNSEAIRT AHNSFARPEP FVPEEQKAAG KDDDVYHFIS YLPVDGILYE LDGLKEGPIS LGQCPGGQGD LDWVRMVQPV
201: IQERIERYSR SEIRFNLMAI IKNRKDIYTG ELKELQKRRE HILHQLAALQ SERMVDNSNI EALNKSLSEV NAGIEGATEK ILMEEEKFKK WRTENIRRKH
301: NYIPFLFNFL KILAEKKQLK PLIEKAKQKT NNSR
101: PELSMLKEFT KNFPPELKGL AINNSEAIRT AHNSFARPEP FVPEEQKAAG KDDDVYHFIS YLPVDGILYE LDGLKEGPIS LGQCPGGQGD LDWVRMVQPV
201: IQERIERYSR SEIRFNLMAI IKNRKDIYTG ELKELQKRRE HILHQLAALQ SERMVDNSNI EALNKSLSEV NAGIEGATEK ILMEEEKFKK WRTENIRRKH
301: NYIPFLFNFL KILAEKKQLK PLIEKAKQKT NNSR
001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST
Arabidopsis Description
UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.