Factsheet for Zm00001d049911_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d004812_P002
Zm00001d020359_P003
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT1G65650.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT1G65650.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT5G16310.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT5G16310.1	Zm00001d020359_P003	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95226	Sorghum	cytosol	89.42	84.29
Zm00001d031894_P005	Maize	cytosol	87.18	76.62
Os02t0180100-01	Rice	nucleus	80.77	76.6
TraesCS6D01G137100.1	Wheat	cytosol	79.49	75.61
TraesCS6B01G176100.1	Wheat	cytosol	79.17	75.3
TraesCS6A01G147800.1	Wheat	cytosol	79.17	75.3
HORVU6Hr1G029150.7	Barley	cytosol	78.21	74.16
GSMUA_AchrUn_...	Banana	cytosol	55.13	65.9
Solyc09g018730.2.1	Tomato	cytosol, nucleus	63.78	63.17
GSMUA_Achr3P00030_001	Banana	cytosol	62.18	62.38
PGSC0003DMT400052269	Potato	cytosol	64.1	59.88
KRG92573	Soybean	cytosol, nucleus	63.78	59.58
KRH34213	Soybean	cytosol	63.46	59.28
VIT_04s0044g02040.t01	Wine grape	cytosol	61.22	57.19
CDY39276	Canola	cytosol	58.33	55.32
AT1G65650.1	Thale cress	cytosol	58.33	55.15
CDY07458	Canola	cytosol	58.01	55.02
Bra004123.1-P	Field mustard	cytosol	58.01	55.02
CDX70685	Canola	cytosol	56.73	53.8
AT5G16310.1	Thale cress	cytosol	56.73	52.99
CDX78681	Canola	cytosol	57.05	52.82
Zm00001d018512_P001	Maize	cytosol	57.05	48.77
HORVU6Hr1G083540.21	Barley	plastid	48.4	48.24
Zm00001d051882_P001	Maize	nucleus	10.58	41.77
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	40.71	40.32

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	UniProt:A0A1D6PYP0
ProteinID:AQK51564.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	PFAM:PF01088	PIRSF:PIRSF038120
PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf
SUPFAM:SSF54001	UniParc:UPI000844DA6E	InterPro:Ubiquitinyl_hydrolase_UCH37	EnsemblPlantsGene:Zm00001d049911	EnsemblPlants:Zm00001d049911_P001	EnsemblPlants:Zm00001d049911_T001
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase

Coordinates

chr4:+:52098145..52099814

Molecular Weight (calculated)

35406.1 Da

IEP (calculated)

7.390

GRAVY (calculated)

-0.337

Length

312 amino acids

Sequence
(BLAST)

001: MQLKGLQVDE IYSLDLDALN DLQPIYGLIV LYKWRPPEKD ERPVIKDAIP NLFFANQIIN NACATQAILS VLLNSPGITL SDELKKLKEF AKDLPPELKG
101: LAIVNCESIR MINNSLARSE VSEEQKRPSN GDDVYHFISY VPVDGVLYEL DGLKEGPICL EKCPGGVGDA GWLRLAQPVI KGHIDLFSQN DVRCSVMAIL
201: KNRKEMCTVE LKELKRKRES LLQQTGYPSA IRHVPSVEQS LAEVSAQIEA VTEKMIMEEE KVKTWKTENL RRKHNYVPFL FNFLKILEEK QQLNPLIEKA
301: KAKQKSHCPS PR

Best Arabidopsis Sequence Match ( AT5G16310.1 )
(BLAST)

001: MSWLPVESDP GIFTEIIQQM QVKGVQVEEL YSLDFNSLDE IRPVYGLILL YKWRPEEKEN RVVITEPNPN FFFASQIINN ACATQAILSV LMNSSSIDIG
101: SELSELKQFA KEFPPELKGL AINNNEAIRA AHNTFARPDP SSIMEDEELA AAKNLDEDDD VYHYISYLPV DGILYELDGL KEGPISLGQC LGEPEGIEWL
201: RMVQPVVQEQ IDRYSQNEIR FSLLAVVKNR KEMYVAELKE YQRKRERVLQ QLGALQADKY AEKSSYEALD RELSEVNIGI ETVSQKIVME EEKSKNWKKE
301: NMRRKHNYVP FLFNFLKILA DKKKLKPLIA KHHP

Arabidopsis Description

UCH1Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.