Factsheet for Os02t0180100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02
Os09t0386400-01
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	Os11t0171500-01	AT1G35670.1	19130088
AT1G65650.1	Os12t0169800-00	AT1G35670.1	19130088
AT5G16310.1	Os04t0654700-02	AT1G71230.1	21798944
AT5G16310.1	Os09t0386400-01	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14068	Sorghum	cytosol	86.02	85.5
TraesCS6D01G137100.1	Wheat	cytosol	85.11	85.37
TraesCS6B01G176100.1	Wheat	cytosol	84.8	85.06
TraesCS6A01G147800.1	Wheat	cytosol	84.5	84.76
EER95226	Sorghum	cytosol	83.89	83.38
HORVU6Hr1G029150.7	Barley	cytosol	81.76	81.76
Zm00001d049911_P001	Maize	cytosol	76.6	80.77
Zm00001d031894_P005	Maize	cytosol	83.28	77.18
GSMUA_Achr3P00030_001	Banana	cytosol	69.0	72.99
GSMUA_AchrUn_...	Banana	cytosol	56.23	70.88
PGSC0003DMT400052269	Potato	cytosol	70.21	69.16
KRG92573	Soybean	cytosol, nucleus	69.91	68.86
KRH34213	Soybean	cytosol	69.91	68.86
Solyc09g018730.2.1	Tomato	cytosol, nucleus	65.65	68.57
VIT_04s0044g02040.t01	Wine grape	cytosol	68.69	67.66
AT1G65650.1	Thale cress	cytosol	67.17	66.97
CDY07458	Canola	cytosol	66.57	66.57
Bra004123.1-P	Field mustard	cytosol	66.57	66.57
CDY39276	Canola	cytosol	66.57	66.57
Os02t0822200-01	Rice	cytosol	64.74	64.35
CDX70685	Canola	cytosol	60.79	60.79
AT5G16310.1	Thale cress	cytosol	61.7	60.78
CDX78681	Canola	cytosol	61.4	59.94
HORVU6Hr1G083540.21	Barley	plastid	49.54	52.08
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	38.91	40.63

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	EntrezGene:4328506
EMBL:AK067359	EMBL:AK104700	ProteinID:BAD28018.1	ProteinID:BAF08003.1	ProteinID:BAS77299.1	MEROPS:C12.A02
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056
GO:GO:0009653	GO:GO:0009987	GO:GO:0010016	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR036959	EnsemblPlantsGene:Os02g0180100	EnsemblPlants:Os02t0180100-01	PFAM:PF01088	PIRSF:PIRSF038120
PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf
UniProt:Q6ETK2	SUPFAM:SSF54001	UniParc:UPI00003CE5B1	InterPro:Ubiquitinyl_hydrolase_UCH37	RefSeq:XP_015626407.1	SEG:seg

Description

Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 family protein. (Os02t0180100-01)

Coordinates

chr2:-:4455016..4457715

Molecular Weight (calculated)

37619.5 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.418

Length

329 amino acids

Sequence
(BLAST)

001: MSWAAIENDP GIFTELLQQM QLKGLQVDEL YSLDLDALND LQPVYGLIVL YKWQPPEKDE RPIKDPIPNL FFAKQIINNA CATQAIVSVL LNSPGITLSE
101: ELKKLKEFAK DLPPDLKGLA IVNSESIRLA SNSFARPEVP EEQKSSVKDD DVYHFISYVP VDGVLYELDG LKEGPISLGK CPGGVGDIGW LRMVQPVIQE
201: RIDRFSQNEI RFSVMAILKN RREKFTLELK ELQRKRENLL AQMGDPSANR HAPSVEHSLA EVAAHIEAVT EKIIMEEEKW KKWKTENIRR KHNYVPFLFN
301: FLKILEERQQ LKPLIEKAKQ KSHSSANPR

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.