Factsheet for PGSC0003DMT400052269

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400023896
PGSC0003DMT400034206
PGSC0003DMT400056705
PGSC0003DMT400067082
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	PGSC0003DMT400002331	AT1G35670.1	19130088
AT1G65650.1	PGSC0003DMT400067082	AT1G35670.1	19130088
AT5G16310.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT5G16310.1	PGSC0003DMT400069203	AT1G71230.1	21798944
AT5G16310.1	PGSC0003DMT400034206	AT2G19560.1	19843313
AT5G16310.1	PGSC0003DMT400056705	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g018730.2.1	Tomato	cytosol, nucleus	93.41	99.05
KRH34213	Soybean	cytosol	89.52	89.52
KRG92573	Soybean	cytosol, nucleus	89.52	89.52
VIT_04s0044g02040.t01	Wine grape	cytosol	89.22	89.22
GSMUA_Achr3P00030_001	Banana	cytosol	82.04	88.1
AT1G65650.1	Thale cress	cytosol	80.24	81.21
Bra004123.1-P	Field mustard	cytosol	79.64	80.85
CDY07458	Canola	cytosol	79.64	80.85
CDY39276	Canola	cytosol	79.64	80.85
GSMUA_AchrUn_...	Banana	cytosol	60.48	77.39
Os02t0180100-01	Rice	nucleus	69.16	70.21
AT5G16310.1	Thale cress	cytosol	68.26	68.26
EES14068	Sorghum	cytosol	67.37	67.98
CDX70685	Canola	cytosol	66.47	67.48
CDX78681	Canola	cytosol	67.66	67.06
EER95226	Sorghum	cytosol	66.17	66.77
TraesCS6D01G137100.1	Wheat	cytosol	65.27	66.46
TraesCS6A01G147800.1	Wheat	cytosol	64.97	66.16
TraesCS6B01G176100.1	Wheat	cytosol	64.97	66.16
HORVU6Hr1G029150.7	Barley	cytosol	63.17	64.13
Zm00001d049911_P001	Maize	cytosol	59.88	64.1
Zm00001d031894_P005	Maize	cytosol	64.97	61.13
HORVU6Hr1G083540.21	Barley	plastid	40.72	43.45
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	31.14	33.02

Protein Annotations

Gene3D:1.20.58.860	EntrezGene:102599895	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10
MEROPS:C12.A02	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	UniProt:M1BT38	PFAM:PF01088
EnsemblPlantsGene:PGSC0003DMG400020283	PGSC:PGSC0003DMG400020283	EnsemblPlants:PGSC0003DMT400052269	PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589
PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI0002963661
InterPro:Ubiquitinyl_hydrolase_UCH37	RefSeq:XP_006344362.1	RefSeq:XP_006344363.1	RefSeq:XP_006344364.1	:	:

Description

Ubiquitin carboxyl-terminal hydrolase isozyme L5 [Source:PGSC_GENE;Acc:PGSC0003DMG400020283]

Coordinates

chr9:-:36650843..36659206

Molecular Weight (calculated)

38265.0 Da

IEP (calculated)

5.925

GRAVY (calculated)

-0.455

Length

334 amino acids

Sequence
(BLAST)

001: MSWCTIESDP GVFTELMQQM QVKGVQVEEL YSLDLDELNS LRPVYGLIFL FKWRPGEKDD RLVIKDPNPN LFFASQVINN ACATQAILSI LLNSPDVDIG
101: PELSALKEFT KNFPPELKGL AINNSEAIRT AHNSFARPEP FVPEEQKAAG KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGGQGD IEWLRMVQPV
201: IQERIERYSQ SEIRFNLMAV VKNRKEVYTA ELKELQKRRE RILQQLAASQ SERMVDSSPV ESLNKSLAEV NSGIEAVSDK ILREEEKFKK WKTENIRRKH
301: NYIPFLFNFL KILAEKKQLR PLIEKAKQKT TNPR

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.