Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78681 | Canola | cytosol | 88.02 | 87.24 |
| CDX70685 | Canola | cytosol | 83.83 | 85.11 |
| KRG92573 | Soybean | cytosol, nucleus | 70.36 | 70.36 |
| KRH34213 | Soybean | cytosol | 70.36 | 70.36 |
| GSMUA_Achr3P00030_001 | Banana | cytosol | 64.97 | 69.77 |
| PGSC0003DMT400052269 | Potato | cytosol | 68.26 | 68.26 |
| Solyc09g018730.2.1 | Tomato | cytosol, nucleus | 64.07 | 67.94 |
| VIT_04s0044g02040.t01 | Wine grape | cytosol | 67.37 | 67.37 |
| GSMUA_AchrUn_... | Banana | cytosol | 52.4 | 67.05 |
| AT1G65650.1 | Thale cress | cytosol | 63.17 | 63.94 |
| Os02t0180100-01 | Rice | nucleus | 60.78 | 61.7 |
| EES14068 | Sorghum | cytosol | 60.18 | 60.73 |
| TraesCS6D01G137100.1 | Wheat | cytosol | 59.58 | 60.67 |
| TraesCS6A01G147800.1 | Wheat | cytosol | 59.28 | 60.37 |
| TraesCS6B01G176100.1 | Wheat | cytosol | 59.28 | 60.37 |
| EER95226 | Sorghum | cytosol | 59.28 | 59.82 |
| HORVU6Hr1G029150.7 | Barley | cytosol | 58.68 | 59.57 |
| Zm00001d049911_P001 | Maize | cytosol | 52.99 | 56.73 |
| Zm00001d031894_P005 | Maize | cytosol | 58.68 | 55.21 |
| HORVU6Hr1G083540.21 | Barley | plastid | 38.32 | 40.89 |
| HORVU5Hr1G105430.16 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 29.04 | 30.79 |
Protein Annotations
| Gene3D:1.20.58.860 | MapMan:19.2.2.1.2.1 | MapMan:19.2.2.3.2.1 | MapMan:19.2.6.2.3 | Gene3D:3.40.532.10 | EntrezGene:831492 |
| ProteinID:AED92278.1 | EMBL:AK118002 | ArrayExpress:AT5G16310 | EnsemblPlantsGene:AT5G16310 | RefSeq:AT5G16310 | TAIR:AT5G16310 |
| RefSeq:AT5G16310-TAIR-G | EnsemblPlants:AT5G16310.1 | TAIR:AT5G16310.1 | Unigene:At.60876 | ProteinID:BAB09598.1 | EMBL:BT005312 |
| MEROPS:C12.A01 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006508 |
| GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 |
| GO:GO:0009056 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010016 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR036959 | RefSeq:NP_197135.1 | PFAM:PF01088 | PIRSF:PIRSF038120 |
| PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PRINTS:PR00707 | PANTHER:PTHR10589 | PANTHER:PTHR10589:SF30 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C12_UCH |
| InterPro:Peptidase_C12_UCH_sf | UniProt:Q9FFF2 | SUPFAM:SSF54001 | Symbol:UCH1 | UniParc:UPI000000C5E3 | InterPro:Ubiquitinyl_hydrolase_UCH37 |
| SEG:seg | : | : | : | : | : |
Description
UCH1Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF2]
Coordinates
chr5:-:5342391..5344285
Molecular Weight (calculated)
38541.2 Da
IEP (calculated)
4.804
GRAVY (calculated)
-0.445
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWLPVESDP GIFTEIIQQM QVKGVQVEEL YSLDFNSLDE IRPVYGLILL YKWRPEEKEN RVVITEPNPN FFFASQIINN ACATQAILSV LMNSSSIDIG
101: SELSELKQFA KEFPPELKGL AINNNEAIRA AHNTFARPDP SSIMEDEELA AAKNLDEDDD VYHYISYLPV DGILYELDGL KEGPISLGQC LGEPEGIEWL
201: RMVQPVVQEQ IDRYSQNEIR FSLLAVVKNR KEMYVAELKE YQRKRERVLQ QLGALQADKY AEKSSYEALD RELSEVNIGI ETVSQKIVME EEKSKNWKKE
301: NMRRKHNYVP FLFNFLKILA DKKKLKPLIA KHHP
101: SELSELKQFA KEFPPELKGL AINNNEAIRA AHNTFARPDP SSIMEDEELA AAKNLDEDDD VYHYISYLPV DGILYELDGL KEGPISLGQC LGEPEGIEWL
201: RMVQPVVQEQ IDRYSQNEIR FSLLAVVKNR KEMYVAELKE YQRKRERVLQ QLGALQADKY AEKSSYEALD RELSEVNIGI ETVSQKIVME EEKSKNWKKE
301: NMRRKHNYVP FLFNFLKILA DKKKLKPLIA KHHP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.