Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004123.1-P | Field mustard | cytosol | 86.97 | 87.23 |
| CDY07458 | Canola | cytosol | 86.97 | 87.23 |
| CDY39276 | Canola | cytosol | 86.97 | 87.23 |
| GSMUA_Achr3P00030_001 | Banana | cytosol | 76.97 | 81.67 |
| PGSC0003DMT400052269 | Potato | cytosol | 81.21 | 80.24 |
| Solyc09g018730.2.1 | Tomato | cytosol, nucleus | 75.45 | 79.05 |
| KRG92573 | Soybean | cytosol, nucleus | 80.0 | 79.04 |
| KRH34213 | Soybean | cytosol | 79.7 | 78.74 |
| VIT_04s0044g02040.t01 | Wine grape | cytosol | 79.09 | 78.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 56.67 | 71.65 |
| Os02t0180100-01 | Rice | nucleus | 66.97 | 67.17 |
| AT5G16310.1 | Thale cress | cytosol | 63.94 | 63.17 |
| EES14068 | Sorghum | cytosol | 63.33 | 63.14 |
| TraesCS6D01G137100.1 | Wheat | cytosol | 62.42 | 62.8 |
| EER95226 | Sorghum | cytosol | 62.73 | 62.54 |
| TraesCS6A01G147800.1 | Wheat | cytosol | 62.12 | 62.5 |
| TraesCS6B01G176100.1 | Wheat | cytosol | 62.12 | 62.5 |
| HORVU6Hr1G029150.7 | Barley | cytosol | 60.61 | 60.79 |
| Zm00001d049911_P001 | Maize | cytosol | 55.15 | 58.33 |
| Zm00001d031894_P005 | Maize | cytosol | 61.52 | 57.18 |
| HORVU6Hr1G083540.21 | Barley | plastid | 38.79 | 40.89 |
| HORVU5Hr1G105430.16 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 30.3 | 31.75 |
Protein Annotations
| Gene3D:1.20.58.860 | MapMan:19.2.2.1.2.1 | MapMan:19.2.2.3.2.1 | MapMan:19.2.6.2.3 | Gene3D:3.40.532.10 | EntrezGene:842876 |
| UniProt:A0A178WM46 | ProteinID:AAB60914.1 | ProteinID:AAF23845.1 | ProteinID:AEE34407.1 | EMBL:AF412059 | ArrayExpress:AT1G65650 |
| EnsemblPlantsGene:AT1G65650 | RefSeq:AT1G65650 | TAIR:AT1G65650 | RefSeq:AT1G65650-TAIR-G | EnsemblPlants:AT1G65650.1 | TAIR:AT1G65650.1 |
| EMBL:AY065083 | EMBL:AY114549 | Unigene:At.23747 | MEROPS:C12.A02 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004843 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010016 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | InterPro:IPR036959 | RefSeq:NP_564858.1 | UniProt:O04482 | ProteinID:OAP19340.1 | PFAM:PF01088 |
| PIRSF:PIRSF038120 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00707 | PANTHER:PTHR10589 |
| PANTHER:PTHR10589:SF30 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C12_UCH | InterPro:Peptidase_C12_UCH_sf | SUPFAM:SSF54001 | Symbol:UCH2 |
| UniParc:UPI00000A5F1B | InterPro:Ubiquitinyl_hydrolase_UCH37 | SEG:seg | : | : | : |
Description
UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
Coordinates
chr1:-:24415015..24417769
Molecular Weight (calculated)
37500.8 Da
IEP (calculated)
4.748
GRAVY (calculated)
-0.379
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.