Factsheet for Zm00001d031894_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d004812_P002
Zm00001d020359_P003
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT1G65650.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT1G65650.1	Zm00001d053016_P002	AT1G35670.1	19130088
AT5G16310.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT5G16310.1	Zm00001d020359_P003	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14068	Sorghum	cytosol	86.2	92.45
Zm00001d049911_P001	Maize	cytosol	76.62	87.18
Os02t0180100-01	Rice	nucleus	77.18	83.28
TraesCS6D01G137100.1	Wheat	cytosol	76.9	83.23
TraesCS6B01G176100.1	Wheat	cytosol	76.62	82.93
TraesCS6A01G147800.1	Wheat	cytosol	76.34	82.62
HORVU6Hr1G029150.7	Barley	cytosol	74.65	80.55
GSMUA_AchrUn_...	Banana	cytosol	51.27	69.73
GSMUA_Achr3P00030_001	Banana	cytosol	60.85	69.45
KRG92573	Soybean	cytosol, nucleus	61.69	65.57
KRH34213	Soybean	cytosol	61.41	65.27
PGSC0003DMT400052269	Potato	cytosol	61.13	64.97
Solyc09g018730.2.1	Tomato	cytosol, nucleus	56.62	63.81
VIT_04s0044g02040.t01	Wine grape	cytosol	59.72	63.47
CDY39276	Canola	cytosol	57.18	61.7
AT1G65650.1	Thale cress	cytosol	57.18	61.52
CDY07458	Canola	cytosol	56.9	61.4
Bra004123.1-P	Field mustard	cytosol	56.9	61.4
CDX70685	Canola	cytosol	54.93	59.27
AT5G16310.1	Thale cress	cytosol	55.21	58.68
CDX78681	Canola	cytosol	55.49	58.46
Zm00001d018512_P001	Maize	cytosol	55.21	53.7
HORVU6Hr1G083540.21	Barley	plastid	46.2	52.4
Zm00001d051882_P001	Maize	nucleus	10.14	45.57
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	38.31	43.17

Protein Annotations

Gene3D:1.20.58.860	EntrezGene:100191319	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10
UniProt:A0A1D6KM35	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	ProteinID:ONM03907.1	PFAM:PF01088
PIRSF:PIRSF038120	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf
SUPFAM:SSF54001	UniParc:UPI000842E2C1	InterPro:Ubiquitinyl_hydrolase_UCH37	EnsemblPlantsGene:Zm00001d031894	EnsemblPlants:Zm00001d031894_P005	EnsemblPlants:Zm00001d031894_T005
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase

Coordinates

chr1:+:205693711..205696793

Molecular Weight (calculated)

40370.9 Da

IEP (calculated)

5.524

GRAVY (calculated)

-0.274

Length

355 amino acids

Sequence
(BLAST)

001: MSWAAIENDP GVFTELLQQM QLKGLQVSNQ LSSLYESMFL LKVDDILCYL FHYQVDELYS LDLDALNDLQ PIYGLILLYK WRPPEKDEGP VIKDAIPNLF
101: FANQIINKAC ATQAIVSVLL NSPGITLSDE LKKLKEFAKD LPPELKGLAI VNCASIRMLN NSFARSEASE EQKPPSGDDD VYHFINYVPV DGVLYELDGL
201: KEGPISLGKC PGGVGDAGWW LRLAQPVIKE HIDLFSQNEI RFSVMAILKN RKEMFTVEIK ELQRKREGLL QQMGDPNASR HVEQSLAEVA AQIESVTEKI
301: IMEEEKVKKW KAENLRRKHN YVPFLFNFLK ILEEKQQLKP LIEKAKAKQK SHGPS

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.