Factsheet for Zm00001d018512_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31437	Sorghum	vacuole	83.56	83.56
Os02t0822200-01	Rice	cytosol	75.62	83.38
TraesCS6A01G402500.1	Wheat	cytosol	71.51	76.76
TraesCS6B01G444700.1	Wheat	cytosol	71.23	76.7
HORVU6Hr1G092480.4	Barley	cytosol	66.3	68.36
TraesCS6D01G386100.1	Wheat	cytosol	61.1	58.53
Zm00001d049911_P001	Maize	cytosol	48.77	57.05
Zm00001d031894_P005	Maize	cytosol	53.7	55.21
Zm00001d051882_P001	Maize	nucleus	11.78	54.43

Protein Annotations

Gene3D:1.20.58.860	EntrezGene:100382000	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10
UniProt:A0A1D6HPV4	ProteinID:AQK76304.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	PFAM:PF01088
PIRSF:PIRSF038120	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf
SUPFAM:SSF54001	UniParc:UPI0008431480	InterPro:Ubiquitinyl_hydrolase_UCH37	EnsemblPlantsGene:Zm00001d018512	EnsemblPlants:Zm00001d018512_P001	EnsemblPlants:Zm00001d018512_T001
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 2

Coordinates

chr5:+:222155942..222159306

Molecular Weight (calculated)

42232.7 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.340

Length

365 amino acids

Sequence
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQDLED MHFSLRWKSF TLSMWALLVN CGENLYYLCR HYLQSECLEH IFVLSTFLRP VYGLIFLFKW IPGEKDERPV
101: VRDPNPNLFF AHQVITNACA TQAILSVLMN RPEIDIGPEL SQLKEFTGAF TPDLKGLAIS NSESIRTAHN SFARPEPFIS DEQRAATKDD DVYHFISYLP
201: FEGVLYELDG LKEGPVNLGQ CDGADDLDWL RMVQPVIQER IERYSQSEIR FNLMAIIKNR KEVYSAELEE LEKRREQILQ EMNNASSTES LSSSLTEVIS
301: AIETVTEKVI MEEEKFKKWK KENIRRKHNY IPFLFNLLKM LAEKQQLKPL VEKAKQQKSA SPSTS

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.