CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0822200-01	Rice	cytosol	77.81	85.8
Zm00001d018512_P001	Maize	cytosol	83.56	83.56
TraesCS6A01G402500.1	Wheat	cytosol	74.25	79.71
TraesCS6B01G444700.1	Wheat	cytosol	73.7	79.35
HORVU6Hr1G092480.4	Barley	cytosol	69.04	71.19
EES14068	Sorghum	cytosol	57.53	63.44
EER95226	Sorghum	cytosol	55.89	61.63
TraesCS6D01G386100.1	Wheat	cytosol	63.84	61.15
CDY54444	Canola	cytosol, plastid, vacuole	7.67	59.57

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	UniProt:A0A194YTD0
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR036959	EnsemblPlants:KXG31437	ProteinID:KXG31437	ProteinID:KXG31437.2
PFAM:PF01088	PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	EnsemblPlantsGene:SORBI_3004G350100	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI000B8B9C15
InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:67882583..67885371

Molecular Weight (calculated)

41761.2 Da

IEP (calculated)

5.219

GRAVY (calculated)

-0.331

Length

365 amino acids

Sequence
(BLAST)

001: MHVLSLLTST ALQKLSVYIC TATSFTGEPG YFSGFARMSW CTIESDPGVF TELIQQMQVK GVQVEELYSL DVDSLSQLRP VYGLIFLFKW IPGEKDERLV
101: VRDPNPNLFF AHQVITNACA TQAILSVLMN RPEIDIGPEL SQLKEFTGAF TPDLKGLAIS NSESIRTAHN SFARPEPFIS DEQRAATKDD DVYHFISYLP
201: FEGVLYELDG LKEGPVNLGQ CGGADDLDWL RMVQPVIQER IERYSQSEIR FNLMAIIKNR KEVYSAELEE LEKRREQILQ EMNKTAATES LNNSLTEVIS
301: AIETVREKMV MEEEKFKKWK TENIRRKHNY IPFLFNLLKM LAEKQQLKPL VEKAKQQKSS SPSTR

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.