CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07458	Canola	cytosol	59.57	8.51
CDY39276	Canola	cytosol	59.57	8.51
Os02t0822200-01	Rice	cytosol	59.57	8.46
KXG31437	Sorghum	vacuole	59.57	7.67
CDX70685	Canola	cytosol	53.19	7.6
CDX78681	Canola	cytosol	53.19	7.42
TraesCS6B01G444700.1	Wheat	cytosol	53.19	7.37
TraesCS6A01G402500.1	Wheat	cytosol	53.19	7.35
TraesCS6D01G386100.1	Wheat	cytosol	53.19	6.56
HORVU6Hr1G092480.4	Barley	cytosol	12.77	1.69
Zm00001d051882_P001	Maize	nucleus	0.0	0.0

Protein Annotations

MapMan:35.2	GO:A0A078IWS4	UniProt:A0A078IWS4	EnsemblPlants:CDY54444	ProteinID:CDY54444	ProteinID:CDY54444.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00014112001	TMHMM:TMhelix	UniParc:UPI0004EEFE44
SEG:seg	:	:	:	:	:

Description

BnaC02g45600DBnaC02g45600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWS4]

Coordinates

chrLK033320:+:57867..60488

Molecular Weight (calculated)

5567.9 Da

IEP (calculated)

4.426

GRAVY (calculated)

0.813

Length

47 amino acids

Sequence
(BLAST)

1: MFWCTIESDP CRLFTELIQQ MQVKGMQVII YFFYSVLSVF VFNCCSA

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.