Factsheet for GSMUA_Achr3P00030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr7P18480_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT1G65650.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT1G65650.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT1G65650.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088
AT5G16310.1	GSMUA_Achr10P...	AT1G71230.1	21798944
AT5G16310.1	GSMUA_Achr7P18480_001	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g02040.t01	Wine grape	cytosol	90.68	84.43
KRG92573	Soybean	cytosol, nucleus	89.39	83.23
KRH34213	Soybean	cytosol	88.42	82.34
PGSC0003DMT400052269	Potato	cytosol	88.1	82.04
GSMUA_AchrUn_...	Banana	cytosol	68.81	81.99
Solyc09g018730.2.1	Tomato	cytosol, nucleus	81.99	80.95
Bra004123.1-P	Field mustard	cytosol	81.67	77.2
CDY07458	Canola	cytosol	81.67	77.2
CDY39276	Canola	cytosol	81.67	77.2
AT1G65650.1	Thale cress	cytosol	81.67	76.97
Os02t0180100-01	Rice	nucleus	72.99	69.0
EES14068	Sorghum	cytosol	71.7	67.37
TraesCS6D01G137100.1	Wheat	cytosol	70.1	66.46
EER95226	Sorghum	cytosol	70.42	66.16
TraesCS6A01G147800.1	Wheat	cytosol	69.77	66.16
TraesCS6B01G176100.1	Wheat	cytosol	69.77	66.16
AT5G16310.1	Thale cress	cytosol	69.77	64.97
CDX70685	Canola	cytosol	68.17	64.44
HORVU6Hr1G029150.7	Barley	cytosol	67.85	64.13
CDX78681	Canola	cytosol	69.13	63.8
Zm00001d049911_P001	Maize	cytosol	62.38	62.18
Zm00001d031894_P005	Maize	cytosol	69.45	60.85
HORVU6Hr1G083540.21	Barley	plastid	43.73	43.45
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	32.8	32.38

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr3G00030_001	EnsemblPlants:GSMUA_Achr3P00030_001	EnsemblPlants:GSMUA_Achr3T00030_001	InterPro:IPR036959	UniProt:M0SAH1
PFAM:PF01088	PIRSF:PIRSF038120	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	UniParc:UPI000295FDB8	InterPro:Ubiquitinyl_hydrolase_UCH37	:

Description

Ubiquitin carboxyl-terminal hydrolase isozyme L5 [Source:GMGC_GENE;Acc:GSMUA_Achr3G00030_001]

Coordinates

chr3:+:15937..20400

Molecular Weight (calculated)

35941.4 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.391

Length

311 amino acids

Sequence
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDLDFLDN LRPVYGLIFL FKWRRGEKDD RPVIKDPNPN LFFASQVINN ACATQAILSI LVNCPDIDIG
101: PELSMLKEFT KNFPPELKGL AINNSEAIRT AHNSFARPEP FVPEEQKVAG KDDDVYHFIS YLPVDGVLYE LDGLKEGPIS LGQCPGGPGD LDWLQMVQPV
201: IQERIDRYSQ SEIRFNLMAI IKNRKEIYTA ELKELQKQRE HLSLTEVTAS IESVSEKILM EEEKFKKWRT ENIRRKHNYI PFLFNFLKIL AEKKQLKPLI
301: EKAKQRSRNP I

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.