Factsheet for HORVU6Hr1G083540.21

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
TargetP:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018470.1
HORVU0Hr1G025410.1
HORVU1Hr1G008160.1
HORVU2Hr1G056160.5
HORVU2Hr1G067660.1
HORVU2Hr1G112000.1
HORVU3Hr1G021300.1
HORVU3Hr1G054660.1
HORVU3Hr1G113750.1
HORVU4Hr1G019530.1
HORVU4Hr1G047410.2
HORVU4Hr1G048730.1
HORVU5Hr1G032550.3
HORVU5Hr1G059930.4
HORVU6Hr1G023630.1
HORVU7Hr1G078010.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	HORVU4Hr1G019530.1	AT1G35670.1	19130088
AT1G65650.1	HORVU5Hr1G032550.3	AT1G35670.1	19130088
AT5G16310.1	HORVU0Hr1G018470.1	AT1G71230.1	21798944
AT5G16310.1	HORVU0Hr1G025410.1	AT1G71230.1	21798944
AT5G16310.1	HORVU1Hr1G008160.1	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G056160.5	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G067660.1	AT1G71230.1	21798944
AT5G16310.1	HORVU2Hr1G112000.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G021300.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G054660.1	AT1G71230.1	21798944
AT5G16310.1	HORVU3Hr1G113750.1	AT1G71230.1	21798944
AT5G16310.1	HORVU4Hr1G047410.2	AT1G71230.1	21798944
AT5G16310.1	HORVU4Hr1G048730.1	AT1G71230.1	21798944
AT5G16310.1	HORVU6Hr1G023630.1	AT1G71230.1	21798944
AT5G16310.1	HORVU7Hr1G078010.1	AT1G71230.1	21798944
AT5G16310.1	HORVU5Hr1G059930.4	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029150.7	Barley	cytosol	59.42	56.53
TraesCS6D01G137100.1	Wheat	cytosol	58.79	56.1
TraesCS6B01G176100.1	Wheat	cytosol	58.47	55.79
TraesCS6A01G147800.1	Wheat	cytosol	58.47	55.79
EES14068	Sorghum	cytosol	53.35	50.45
EER95226	Sorghum	cytosol	52.72	49.85
Os02t0180100-01	Rice	nucleus	52.08	49.54
Zm00001d049911_P001	Maize	cytosol	48.24	48.4
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	46.96	46.67
Zm00001d031894_P005	Maize	cytosol	52.4	46.2
GSMUA_Achr3P00030_001	Banana	cytosol	43.45	43.73
GSMUA_AchrUn_...	Banana	cytosol	36.1	43.3
KRG92573	Soybean	cytosol, nucleus	44.09	41.32
Solyc09g018730.2.1	Tomato	cytosol, nucleus	41.21	40.95
KRH34213	Soybean	cytosol	43.45	40.72
PGSC0003DMT400052269	Potato	cytosol	43.45	40.72
VIT_04s0044g02040.t01	Wine grape	cytosol	42.17	39.52
CDY07458	Canola	cytosol	40.89	38.91
CDY39276	Canola	cytosol	40.89	38.91
Bra004123.1-P	Field mustard	cytosol	40.89	38.91
AT1G65650.1	Thale cress	cytosol	40.89	38.79
CDX70685	Canola	cytosol	40.58	38.6
AT5G16310.1	Thale cress	cytosol	40.89	38.32
CDX78681	Canola	cytosol	41.21	38.28
HORVU6Hr1G092480.4	Barley	cytosol	38.34	33.9

Protein Annotations

MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	UniProt:A0A287UYP7	GO:GO:0003674
GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006508
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:HORVU6Hr1G083540	EnsemblPlants:HORVU6Hr1G083540.21
InterPro:IPR036959	PFAM:PF01088	PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf	SUPFAM:SSF54001	SignalP:SignalP-noTM	UniParc:UPI000B4873B4	SEG:seg

Description

Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A287UYP7]

Coordinates

chrchr6H:-:551826912..551829134

Molecular Weight (calculated)

34970.4 Da

IEP (calculated)

7.940

GRAVY (calculated)

-0.089

Length

313 amino acids

Sequence
(BLAST)

001: TASIFFPLHH PVSLLSLLTY PSSSSPPLCP RTALRPPSVP HTPRRRRPPC PVASPLSPPH PQSWTSVLRS APAIDCRFAE GSSTCLGRQS RMTLVIELYS
101: LDLDALNDLP YATQLPITMN VVFLNQVYQT IWCFCRPIYG LILLYKWRPA EKDERPVIKD AVPNVLFANQ IINNACTTQA IVSVLLKSSG ITLSEDLKKL
201: KEFAKDMPPE LKGLAIVNCE SIRITSNSFA RSDDYSEEHK SKDDDVYHFI SYVPVDSVLY ELDGLKEGPI SLGKCPGGIG EMGWLKIVQP VIQERIDKFS
301: QNEIRFSVMA ITK

Best Arabidopsis Sequence Match ( AT1G65650.1 )
(BLAST)

001: MSWCTIESDP GVFTELIQQM QVKGVQVEEL YSLDSDSLNN LRPVYGLIFL FKWQAGEKDE RPTIQDQVSN LFFANQVINN ACATQAILAI LLNSPEVDIG
101: PELSALKEFT KNFPSDLKGL AINNSDSIRA AHNSFARPEP FVPEEQKAAT KDDDVYHFIS YIPVDGVLYE LDGLKEGPIS LGPCPGDQTG IEWLQMVQPV
201: IQERIERYSQ SEIRFNLLAV IKNRKDIYTA ELKELQRQRE QLLQQANTCV DKSEAEAVNA LIAEVGSGIE AASDKIVMEE EKFMKWRTEN IRRKHNYIPF
301: LFNFLKLLAE KKQLKPLIEK AKKQKTESST

Arabidopsis Description

UCH2Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178WM46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.