Factsheet for TraesCS6B01G176100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5A01G201500.1
TraesCS5B01G115400.1
TraesCS5B01G200200.1
TraesCS5D01G122800.1
TraesCS5D01G207800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65650.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT1G65650.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT1G65650.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT1G65650.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT1G65650.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT1G65650.1	TraesCS5D01G122800.1	AT1G35670.1	19130088
AT5G16310.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT5G16310.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT5G16310.1	TraesCS5A01G201500.1	AT2G19560.1	19843313
AT5G16310.1	TraesCS5B01G200200.1	AT2G19560.1	19843313
AT5G16310.1	TraesCS5D01G207800.1	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G137100.1	Wheat	cytosol	99.7	99.7
TraesCS6A01G147800.1	Wheat	cytosol	99.09	99.09
HORVU6Hr1G029150.7	Barley	cytosol	93.6	93.31
Os02t0180100-01	Rice	nucleus	85.06	84.8
EES14068	Sorghum	cytosol	85.37	84.59
EER95226	Sorghum	cytosol	83.23	82.48
Zm00001d049911_P001	Maize	cytosol	75.3	79.17
Zm00001d031894_P005	Maize	cytosol	82.93	76.62
GSMUA_Achr3P00030_001	Banana	cytosol	66.16	69.77
GSMUA_AchrUn_...	Banana	cytosol	54.27	68.2
KRG92573	Soybean	cytosol, nucleus	67.38	66.17
KRH34213	Soybean	cytosol	66.46	65.27
PGSC0003DMT400052269	Potato	cytosol	66.16	64.97
Solyc09g018730.2.1	Tomato	cytosol, nucleus	61.59	64.13
VIT_04s0044g02040.t01	Wine grape	cytosol	64.94	63.77
AT1G65650.1	Thale cress	cytosol	62.5	62.12
CDY07458	Canola	cytosol	62.2	62.01
Bra004123.1-P	Field mustard	cytosol	62.2	62.01
CDY39276	Canola	cytosol	62.2	62.01
CDX70685	Canola	cytosol	60.67	60.49
CDX78681	Canola	cytosol	61.59	59.94
AT5G16310.1	Thale cress	cytosol	60.37	59.28
HORVU6Hr1G083540.21	Barley	plastid	55.79	58.47
TraesCS6B01G444700.1	Wheat	cytosol	58.84	56.93
HORVU5Hr1G105430.16	Barley	endoplasmic reticulum, peroxisome, plasma membrane	44.21	46.03

Protein Annotations

Gene3D:1.20.58.860	MapMan:19.2.2.1.2.1	MapMan:19.2.2.3.2.1	MapMan:19.2.6.2.3	Gene3D:3.40.532.10	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	InterPro:IPR036959	PFAM:PF01088	PIRSF:PIRSF038120
PRINTS:PR00707	PANTHER:PTHR10589	PANTHER:PTHR10589:SF30	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C12_UCH	InterPro:Peptidase_C12_UCH_sf
SUPFAM:SSF54001	EnsemblPlantsGene:TraesCS6B01G176100	EnsemblPlants:TraesCS6B01G176100.1	InterPro:Ubiquitinyl_hydrolase_UCH37	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:192345171..192349089

Molecular Weight (calculated)

37540.4 Da

IEP (calculated)

5.921

GRAVY (calculated)

-0.441

Length

328 amino acids

Sequence
(BLAST)

001: MSWAPIENDP GVFTELLQQL QLKGLQVDEL YSLDLDALND LQPIYGLIVL YKWRPPEKDE RPVIKDAVPN LFFANQIINS ACATQAIVSV LLNSSGITLS
101: EDLKKLKEFA KDMPPELKGL AIVNCESIRM TSNSFAKSDD YSEEQKSKDD DVYHFISYVP VDGVLYELDG LKEGPISLGK CPGGIGEMGW LKMVQPVIQE
201: RVDKFAQNEI RFSVMAITKN RKEIFIMELK ELQRKRENLL SQMGDPSANR QRPSIERSLA EVAAQIEAVT EKIIMEEEKA KKWKTENIRR KHNYVPFLFN
301: FLKILEEKQQ LKPLIEKAKQ NSHSRNPK

Best Arabidopsis Sequence Match ( AT5G16310.1 )
(BLAST)

001: MSWLPVESDP GIFTEIIQQM QVKGVQVEEL YSLDFNSLDE IRPVYGLILL YKWRPEEKEN RVVITEPNPN FFFASQIINN ACATQAILSV LMNSSSIDIG
101: SELSELKQFA KEFPPELKGL AINNNEAIRA AHNTFARPDP SSIMEDEELA AAKNLDEDDD VYHYISYLPV DGILYELDGL KEGPISLGQC LGEPEGIEWL
201: RMVQPVVQEQ IDRYSQNEIR FSLLAVVKNR KEMYVAELKE YQRKRERVLQ QLGALQADKY AEKSSYEALD RELSEVNIGI ETVSQKIVME EEKSKNWKKE
301: NMRRKHNYVP FLFNFLKILA DKKKLKPLIA KHHP

Arabidopsis Description

UCH1Ubiquitin carboxyl-terminal hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q9FFF2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.