Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006288.1-P | Field mustard | cytosol, nucleus, plastid | 100.0 | 100.0 |
| CDX91004 | Canola | cytosol | 85.22 | 81.67 |
| CDX85560 | Canola | cytosol | 84.35 | 80.83 |
| CDX85057 | Canola | nucleus | 73.04 | 80.77 |
| AT5G15190.1 | Thale cress | nucleus | 71.3 | 70.69 |
| CDX69543 | Canola | cytosol | 55.65 | 69.57 |
Protein Annotations
| EnsemblPlants:CDX78617 | EnsemblPlantsGene:GSBRNA2T00130031001 | ProteinID:CDX78617 | ProteinID:CDX78617.1 | SEG:seg | UniParc:UPI000253FC0D |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA03g05290D
Coordinates
chrLK031815:-:1553055..1553402
Molecular Weight (calculated)
12645.0 Da
IEP (calculated)
7.425
GRAVY (calculated)
-0.559
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGEADTWPE MEAVARKMAE EVETESSGSS EAETESPRSV GRWGAAPITG KTGKERVHSQ VLKIREEDLC VLVEDKAANG RFVQHPRRLS FVLISRPNLP
101: CSPLSGKVRS VNAVQ
101: CSPLSGKVRS VNAVQ
001: MMTMGGREAE SWPEMEAIAR KMVEEVETES SGSSEAETES PRSVGRWITA KEKVHNQVLK IREEDLCVLV EDKVTNPEDR RYLRPRRFNL FLISRQNLPC
101: SPLSGKGRSV NVVQTQ
101: SPLSGKGRSV NVVQTQ
Arabidopsis Description
At5g15190 [Source:UniProtKB/TrEMBL;Acc:Q8GW49]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.