Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85560 | Canola | cytosol | 99.17 | 99.17 |
| Bra023510.1-P | Field mustard | cytosol | 97.5 | 97.5 |
| CDX78617 | Canola | cytosol, nucleus, plastid | 81.67 | 85.22 |
| CDX85057 | Canola | nucleus | 71.67 | 82.69 |
| CDX69543 | Canola | cytosol | 57.5 | 75.0 |
| AT5G15190.1 | Thale cress | nucleus | 71.67 | 74.14 |
Protein Annotations
| EnsemblPlants:CDX91004 | EnsemblPlantsGene:GSBRNA2T00151766001 | ProteinID:CDX91004 | ProteinID:CDX91004.1 | SEG:seg | UniParc:UPI0004EEEE12 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC02g05930D
Coordinates
chrLK031865:+:265157..265802
Molecular Weight (calculated)
13283.8 Da
IEP (calculated)
8.248
GRAVY (calculated)
-0.518
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRREAEAWS EMEAVARKMV EEVETESSGS SEAETESPRS VGRWGAAPTI TGKTGKERVH SQVLKIREED LCVLVEARAA SLENRRYVHH PPRLGLFLIS
101: RPSLPCSPLS GKVRSVNAVQ
101: RPSLPCSPLS GKVRSVNAVQ
001: MMTMGGREAE SWPEMEAIAR KMVEEVETES SGSSEAETES PRSVGRWITA KEKVHNQVLK IREEDLCVLV EDKVTNPEDR RYLRPRRFNL FLISRQNLPC
101: SPLSGKGRSV NVVQTQ
101: SPLSGKGRSV NVVQTQ
Arabidopsis Description
At5g15190 [Source:UniProtKB/TrEMBL;Acc:Q8GW49]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.