Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69543 | Canola | cytosol | 74.04 | 83.7 |
| CDX78617 | Canola | cytosol, nucleus, plastid | 80.77 | 73.04 |
| CDX85560 | Canola | cytosol | 82.69 | 71.67 |
| CDX91004 | Canola | cytosol | 82.69 | 71.67 |
| AT5G15190.1 | Thale cress | nucleus | 78.85 | 70.69 |
Protein Annotations
| EnsemblPlants:CDX85057 | EnsemblPlantsGene:GSBRNA2T00142502001 | ProteinID:CDX85057 | ProteinID:CDX85057.1 | SEG:seg | UniParc:UPI0004EE5FCE |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g19980D
Coordinates
chrLK031839:-:1792505..1793543
Molecular Weight (calculated)
11834.1 Da
IEP (calculated)
6.946
GRAVY (calculated)
-0.667
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMRGEAEAW PEMEAIARKM VEEVETESSG SSEAETESPR SVGRWTAKER VHSQVLKIRE EDHCVLENRR YLHRPHGLSF FLISRPNLPC SPLSGKVKSL
101: NAIQ
101: NAIQ
001: MMTMGGREAE SWPEMEAIAR KMVEEVETES SGSSEAETES PRSVGRWITA KEKVHNQVLK IREEDLCVLV EDKVTNPEDR RYLRPRRFNL FLISRQNLPC
101: SPLSGKGRSV NVVQTQ
101: SPLSGKGRSV NVVQTQ
Arabidopsis Description
At5g15190 [Source:UniProtKB/TrEMBL;Acc:Q8GW49]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.