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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 6
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:vacuole
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G18490.1 OQU78269 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d039910_P001 Maize vacuole 91.75 92.29
Os01t0140100-01 Rice plastid 80.94 81.75
TraesCS3B01G064700.1 Wheat endoplasmic reticulum, vacuole 78.39 79.32
TraesCS3A01G053600.1 Wheat endoplasmic reticulum, vacuole 78.78 79.25
HORVU3Hr1G009980.3 Barley plastid 75.05 73.04
GSMUA_Achr7P11900_001 Banana vacuole 58.15 62.18
Bra010998.1-P Field mustard cytosol 43.81 62.12
VIT_01s0011g03210.t01 Wine grape extracellular, vacuole 55.4 57.43
KRH75429 Soybean plasma membrane, plastid, vacuole 54.42 57.23
KRH70570 Soybean plastid 54.22 57.02
CDY24395 Canola plasma membrane 52.85 55.81
AT1G25510.1 Thale cress vacuole 52.65 55.49
CDY51131 Canola plasma membrane 47.15 55.05
PGSC0003DMT400033734 Potato vacuole 52.06 54.98
Bra012473.1-P Field mustard plasma membrane 52.26 54.62
CDY03848 Canola plasma membrane 51.87 54.43
Solyc05g009680.1.1 Tomato vacuole 51.47 54.36
CDX92240 Canola plastid 51.87 53.77
CDY18523 Canola vacuole 52.65 53.71
Bra037580.1-P Field mustard vacuole 52.65 53.71
PGSC0003DMT400014352 Potato endoplasmic reticulum, vacuole 51.28 53.7
GSMUA_Achr4P24330_001 Banana vacuole 45.19 53.61
KRH39233 Soybean nucleus 51.67 53.46
VIT_17s0000g03990.t01 Wine grape endoplasmic reticulum, plasma membrane 52.06 53.43
CDY24483 Canola vacuole 51.47 53.36
Bra022325.1-P Field mustard plastid 51.28 53.16
CDY69364 Canola endoplasmic reticulum, vacuole 52.26 53.09
CDX82342 Canola extracellular, vacuole 51.28 52.3
Bra001707.1-P Field mustard extracellular, vacuole 51.08 52.1
AT3G18490.1 Thale cress plastid 50.88 51.8
CDX75968 Canola extracellular, plasma membrane 51.08 51.69
GSMUA_Achr10P... Banana plasma membrane, plastid, vacuole 61.1 51.32
Solyc06g069220.1.1 Tomato extracellular 47.35 48.69
PGSC0003DMT400010420 Potato endoplasmic reticulum, plastid 46.95 48.68
Solyc03g119690.1.1 Tomato plastid 50.88 48.5
OQU82570 Sorghum endoplasmic reticulum, vacuole 41.65 45.49
EES01017 Sorghum mitochondrion, plastid 44.99 44.21
KXG22664 Sorghum extracellular, plastid, vacuole 42.83 43.51
OQU92922 Sorghum vacuole 40.27 41.84
KXG24090 Sorghum extracellular 40.27 41.41
EES16428 Sorghum extracellular 39.69 40.89
KXG24092 Sorghum vacuole 39.29 40.65
OQU79707 Sorghum vacuole 39.69 40.16
KXG33265 Sorghum vacuole 35.17 39.34
EER88303 Sorghum vacuole 33.2 36.03
EES07349 Sorghum vacuole 32.22 35.81
EES07335 Sorghum vacuole 31.63 35.0
EES07336 Sorghum vacuole 31.83 34.76
EES07353 Sorghum extracellular, vacuole 32.22 34.6
EER96952 Sorghum mitochondrion 32.61 34.51
EER89658 Sorghum vacuole 31.43 34.48
EER88640 Sorghum extracellular, plasma membrane, vacuole 33.99 34.39
EES05617 Sorghum endoplasmic reticulum, vacuole 30.84 33.69
OQU76292 Sorghum plasma membrane, plastid, vacuole 32.22 33.68
EER96951 Sorghum endoplasmic reticulum 32.22 33.61
EER97501 Sorghum vacuole 33.99 33.46
KXG19878 Sorghum vacuole 29.67 33.11
EES03312 Sorghum extracellular 30.26 32.91
EES06163 Sorghum vacuole 31.83 32.86
EER88307 Sorghum endoplasmic reticulum, extracellular, vacuole 29.86 32.69
EER97174 Sorghum vacuole 33.6 32.57
OQU76307 Sorghum endoplasmic reticulum, extracellular, vacuole 29.86 32.41
OQU76291 Sorghum vacuole 29.67 32.13
EER96754 Sorghum endoplasmic reticulum, extracellular, plasma membrane 32.22 32.03
EES14825 Sorghum plastid 30.26 28.36
EER89096 Sorghum plasma membrane, vacuole 25.74 26.95
OQU84087 Sorghum endoplasmic reticulum, vacuole 26.52 26.52
KXG19867 Sorghum golgi 29.08 26.33
EER89099 Sorghum plastid 24.95 24.33
Protein Annotations
MapMan:19.4.3.1Gene3D:2.40.70.10EntrezGene:8060828InterPro:Aspartic_peptidase_A1InterPro:Aspartic_peptidase_ASUniProt:C5XQP2
InterPro:CND41-likeEnsemblPlants:EES02514ProteinID:EES02514ProteinID:EES02514.1GO:GO:0003674GO:GO:0003824
GO:GO:0004190GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0009056
GO:GO:0016787GO:GO:0019538GO:GO:0030163InterPro:IPR021109InterPro:IPR033121InterPro:PEPTIDASE_A1
PFAM:PF14541PFAM:PF14543ScanProsite:PS00141PFscan:PS51767PANTHER:PTHR13683PANTHER:PTHR13683:SF274
InterPro:Peptidase_aspartic_dom_sfEnsemblPlantsGene:SORBI_3003G078400SUPFAM:SSF50630unigene:Sbi.7851SignalP:SignalP-noTMInterPro:TAXi_C
InterPro:TAXi_NTMHMM:TMhelixUniParc:UPI0001A84B50RefSeq:XP_002457394.1SEG:seg:
Description
hypothetical protein
Coordinates
chr3:-:6746499..6748544
Molecular Weight (calculated)
52200.1 Da
IEP (calculated)
5.229
GRAVY (calculated)
0.091
Length
509 amino acids
Sequence
(BLAST)
001: MQPPTFLPLA AAVVAVLLLA VAPTPAVSRH HRSSADTETL DVAASLSLAR AALSTDAAVS LHQSAAAAEA KRSSRESGGG GSLTLRLHSR DFLPEAQQRH
101: ATYRSLVQSR LRRDSARAAA LSARATLAAD GVTRQDLRPA NESAVFGASL AAAIQGPVVS GVGQGSGEYF SRVGIGSPAR ELYMVLDTGS DVTWVQCQPC
201: ADCYQQSDPV FDPSLSASYA AVSCDSPRCR DLDTAACRNA TGACLYEVAY GDGSYTVGDF ATETLTLGDS TPVTNVAIGC GHDNEGLFVG AAGLLALGGG
301: PLSFPSQISA STFSYCLVDR DSPAASTLQF GADGAEADTV TAPLVRSPRT GTFYYVALSG ISVGGQALSI PSSAFAMDAT SGSGGVIVDS GTAVTRLQSS
401: AYAALRDAFV RGTPSLPRTS GVSLFDTCYD LSDRTSVEVP AVSLRFEGGG ALRLPAKNYL IPVDGAGTYC LAFAPTNAAV SIIGNVQQQG TRVSFDTAKG
501: VVGFTPNKC
Best Arabidopsis Sequence Match ( AT1G25510.1 )
(BLAST)
001: MSPNYSFFFF IFFLTSHSSV FSRILPETST TTTSILNVAD SIHRTKYTSS FRLNQQEEQT HSASSSFSLQ LHSRVSVRGT EHSDYKSLTL ARLNRDTARV
101: KSLITRLDLA INNISKADLK PISTMYTTEE QDIEAPLISG TTQGSGEYFT RVGIGKPARE VYMVLDTGSD VNWLQCTPCA DCYHQTEPIF EPSSSSSYEP
201: LSCDTPQCNA LEVSECRNAT CLYEVSYGDG SYTVGDFATE TLTIGSTLVQ NVAVGCGHSN EGLFVGAAGL LGLGGGLLAL PSQLNTTSFS YCLVDRDSDS
301: ASTVDFGTSL SPDAVVAPLL RNHQLDTFYY LGLTGISVGG ELLQIPQSSF EMDESGSGGI IIDSGTAVTR LQTEIYNSLR DSFVKGTLDL EKAAGVAMFD
401: TCYNLSAKTT VEVPTVAFHF PGGKMLALPA KNYMIPVDSV GTFCLAFAPT ASSLAIIGNV QQQGTRVTFD LANSLIGFSS NKC
Arabidopsis Description
Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:Q9C6M0]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.