Factsheet for Os01t0598600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

nucleus: 18022940
extracellular: 19038476
cytosol: 19685898
nucleus: 26035336
plastid: 27992503

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0182100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01300.1	Os02t0182100-01	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G214100.1	Wheat	nucleus	82.6	84.63
TraesCS3D01G216700.1	Wheat	vacuole	82.2	84.05
HORVU3Hr1G052320.1	Barley	mitochondrion, plasma membrane, plastid, vacuole	82.2	81.55
Zm00001d044390_P001	Maize	plasma membrane	77.6	80.0
EES01017	Sorghum	mitochondrion, plastid	82.8	79.92
TraesCS3B01G244800.1	Wheat	plastid	83.6	79.02
Os05t0590000-01	Rice	extracellular	70.8	73.6
Solyc01g096040.2.1	Tomato	nucleus, plastid	57.2	59.46
PGSC0003DMT400000651	Potato	vacuole	56.8	59.17
KRH47900	Soybean	nucleus	55.0	58.14
KRH68920	Soybean	nucleus	52.8	57.27
KRG97194	Soybean	endoplasmic reticulum	54.0	57.2
CDY15187	Canola	vacuole	55.0	57.17
Bra033271.1-P	Field mustard	vacuole	55.0	57.17
CDX90023	Canola	vacuole	55.0	57.17
KRH06457	Soybean	endoplasmic reticulum, vacuole	54.2	56.93
VIT_15s0046g00360.t01	Wine grape	extracellular	55.0	56.24
AT1G01300.1	Thale cress	vacuole	54.4	56.08
OQU92922	Sorghum	vacuole	54.4	55.51
KXG24092	Sorghum	vacuole	54.6	55.49
EES16428	Sorghum	extracellular	54.8	55.47
Solyc10g009410.1.1	Tomato	extracellular	50.4	55.02
CDY43952	Canola	vacuole	53.0	54.87
Bra014420.1-P	Field mustard	vacuole	52.8	54.66
CDX89133	Canola	vacuole	52.8	54.66
KXG24090	Sorghum	extracellular	53.8	54.34
AT3G61820.1	Thale cress	extracellular, vacuole	52.2	54.04
CDX67868	Canola	vacuole	52.4	54.02
OQU79707	Sorghum	vacuole	54.0	53.68
Bra003476.1-P	Field mustard	vacuole	52.0	53.61
PGSC0003DMT400048585	Potato	vacuole	49.4	53.58
CDY25081	Canola	vacuole	51.0	52.58
GSMUA_Achr3P31640_001	Banana	cytosol	59.0	52.49
Os01t0720000-00	Rice	vacuole	44.0	49.33
Os01t0140100-01	Rice	plastid	47.2	46.83
Os06t0306500-00	Rice	plasma membrane, vacuole	28.2	35.61
Os02t0720600-01	Rice	extracellular	32.6	35.21
Os06t0118000-01	Rice	cytosol, peroxisome	18.0	34.75
Os06t0304600-02	Rice	endoplasmic reticulum, vacuole	32.4	34.54
Os02t0720900-01	Rice	nucleus	31.6	34.5
Os09t0482200-01	Rice	plasma membrane, vacuole	33.2	34.23
Os09t0482500-01	Rice	extracellular	33.2	34.23
Os06t0610800-01	Rice	nucleus, plastid	35.4	34.1
Os02t0314600-01	Rice	extracellular	34.6	33.66
Os09t0423500-01	Rice	endoplasmic reticulum, vacuole	28.6	30.23
Os08t0267300-00	Rice	plasma membrane, vacuole	31.2	29.77
Os06t0121800-00	Rice	endoplasmic reticulum, plasma membrane	28.8	29.45
Os06t0118700-02	Rice	extracellular	29.0	29.35
Os06t0121500-01	Rice	endoplasmic reticulum, extracellular	25.8	29.19
Os06t0119600-01	Rice	nucleus	26.4	26.67
Os04t0677100-00	Rice	vacuole	26.2	26.25

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	EntrezGene:4325964	MEROPS:A01.050	InterPro:Aspartic_peptidase_A1	ProteinID:BAB63755.1
ProteinID:BAF05399.1	ProteinID:BAS73006.1	InterPro:CND41-like	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004190	GO:GO:0005488	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	InterPro:IPR021109
InterPro:IPR033121	EnsemblPlantsGene:Os01g0598600	EnsemblPlants:Os01t0598600-01	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543
PRINTS:PR00792	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF355	InterPro:Peptidase_aspartic_dom_sf	UniProt:Q94D20
SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N	TMHMM:TMhelix	UniParc:UPI00000A05B1
RefSeq:XP_015644424.1	SEG:seg	:	:	:	:

Description

Peptidase A1 domain containing protein. (Os01t0598600-01);Similar to predicted protein. (Os01t0598600-03)

Coordinates

chr1:+:23515008..23516765

Molecular Weight (calculated)

51145.9 Da

IEP (calculated)

8.531

GRAVY (calculated)

0.173

Length

500 amino acids

Sequence
(BLAST)

001: MAPPPSLLAT ALLLLLLAIA GGPNAAAVAE AVRYQTLVAT PLSPHPYTAT AVEDDGLFQG SLAADEGGAA ASTVGLRVVH RDDFAVNATA AELLAHRLRR
101: DKRRASRISA AAGGAAAANG TRVGGGGGGS GFVAPVVSGL AQGSGEYFTK IGVGTPVTPA LMVLDTGSDV VWLQCAPCRR CYDQSGQMFD PRASHSYGAV
201: DCAAPLCRRL DSGGCDLRRK ACLYQVAYGD GSVTAGDFAT ETLTFASGAR VPRVALGCGH DNEGLFVAAA GLLGLGRGSL SFPSQISRRF GRSFSYCLVD
301: RTSSSASATS RSSTVTFGSG AVGPSAAASF TPMVKNPRME TFYYVQLMGI SVGGARVPGV AVSDLRLDPS TGRGGVIVDS GTSVTRLARP AYAALRDAFR
401: AAAAGLRLSP GGFSLFDTCY DLSGLKVVKV PTVSMHFAGG AEAALPPENY LIPVDSRGTF CFAFAGTDGG VSIIGNIQQQ GFRVVFDGDG QRLGFVPKGC

Best Arabidopsis Sequence Match ( AT1G01300.1 )
(BLAST)

001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA

Arabidopsis Description

APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.