Factsheet for Solyc06g068550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 4
vacuole 6
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074390	Potato	vacuole	94.28	94.88
Solyc03g117690.2.1	Tomato	vacuole	71.61	71.01
Bra035139.1-P	Field mustard	plastid	29.66	65.42
CDX87358	Canola	mitochondrion	52.12	60.0
VIT_09s0018g01670.t01	Wine grape	vacuole	59.96	59.45
KRH09627	Soybean	vacuole	57.2	57.45
KRH47308	Soybean	extracellular	58.47	57.38
KRH44589	Soybean	extracellular, vacuole	58.26	57.05
GSMUA_Achr4P04280_001	Banana	cytosol	31.78	57.03
CDX79338	Canola	vacuole	57.63	55.85
Bra003596.1-P	Field mustard	vacuole	56.99	55.24
CDX67980	Canola	vacuole	56.78	55.03
AT1G79720.1	Thale cress	extracellular, golgi, vacuole	55.51	54.13
KRH57273	Soybean	endoplasmic reticulum, golgi	32.2	53.15
CDX88562	Canola	golgi, vacuole	54.66	52.98
HORVU5Hr1G064080.3	Barley	endoplasmic reticulum, golgi	47.67	48.49
TraesCS5B01G220700.1	Wheat	endoplasmic reticulum	47.25	48.48
TraesCS5A01G221900.1	Wheat	endoplasmic reticulum, golgi	47.03	48.05
TraesCS5D01G229700.1	Wheat	endoplasmic reticulum, golgi	47.03	48.05
GSMUA_Achr9P22770_001	Banana	cytosol, golgi, mitochondrion, peroxisome	31.14	47.88
GSMUA_Achr5P16410_001	Banana	cytosol	40.04	47.85
Os09t0423500-01	Rice	endoplasmic reticulum, vacuole	47.88	47.78
EER96754	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	48.31	44.53
Zm00001d020536_P001	Maize	extracellular	47.03	44.4
Os08t0267300-00	Rice	plasma membrane, vacuole	45.97	41.41
HORVU5Hr1G093290.1	Barley	mitochondrion, vacuole	44.49	40.94
EES14825	Sorghum	plastid	46.4	40.33
TraesCS5D01G386300.1	Wheat	plastid, vacuole	44.07	40.31
TraesCS5B01G379900.1	Wheat	mitochondrion	44.92	37.86
TraesCS5A01G376300.1	Wheat	extracellular, plastid, vacuole	44.07	37.21
Zm00001d050178_P001	Maize	plasma membrane	45.55	36.75
Solyc08g067100.2.1	Tomato	extracellular, plastid	37.08	34.93
Solyc10g009410.1.1	Tomato	extracellular	29.45	30.35
Solyc01g096040.2.1	Tomato	nucleus, plastid	30.51	29.94
Solyc05g009680.1.1	Tomato	vacuole	29.87	29.25
Solyc06g069220.1.1	Tomato	extracellular	30.51	29.09
Solyc04g008850.1.1	Tomato	extracellular	28.6	28.18
Solyc05g016310.1.1	Tomato	vacuole	28.18	25.29
Solyc03g119690.1.1	Tomato	plastid	28.39	25.09
Solyc07g045100.1.1	Tomato	vacuole	29.03	24.95

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.A07	InterPro:Aspartic_peptidase_A1	InterPro:Aspartic_peptidase_AS	InterPro:CND41-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	InterPro:IPR021109
InterPro:IPR033121	UniProt:K4C829	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	ScanProsite:PS00141
PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF263	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc06g068550.2	EnsemblPlants:Solyc06g068550.2.1	InterPro:TAXi_C	InterPro:TAXi_N	UniParc:UPI00027663AB	SEG:seg

Description

No Description!

Coordinates

chr6:+:42489280..42491680

Molecular Weight (calculated)

51472.2 Da

IEP (calculated)

6.493

GRAVY (calculated)

-0.116

Length

472 amino acids

Sequence
(BLAST)

001: MSPWPYLVFL LLFILLTSSN ANNEQRLHLK TLQRTHQSNS PSCYSQKSKS ENGATVLEMQ HKDYCSGSVT NMNRNHQKQL IIDDDIRVRS IQDSIKNIIS
101: GKIETSSQNN IPISSGVKLH SLNYIVTVTL GGRNTTVIVD TGSDLTWIQC QPCRLCYNQP EPLFNPSVSP TYRKVICNSS VCQTLQSATG NSGSCGNDLQ
201: DCSYVVNYGD GSYTRGELGQ DHLVLGSTSV ENFVFGCGRN NKGLFGLASG IMGLGRSDLS LISQTFETFG GVFSYCLPSA EAKSSGSLVL GGDSNTTIFK
301: NSTPISYTRM LANPQLVTFY FLNLTGVTIG GVAIQDSAFG KTGMIIDSGT VITRLPPTMY KAVKAEFSKQ FSGYPFKQGV SILDTCFDLS AYEEVNIPTV
401: KMQFEGGAEM EVDVTGVLFI VKSDASQVCL ALASLQYDDE IGIIGNYQQK NTRVIYDIKQ SQVGFAKETC SF

Best Arabidopsis Sequence Match ( AT1G79720.1 )
(BLAST)

001: MFKKATLNLS LAPLLLVFLF LLSCVVHGVD EKKILSVHNN IWSPKKSYEA STSCFSRSLG KGRESTTLEM KHRELCSGKT IDLGKKMRRA LVLDNIRVQS
101: LQLKIKAMTS STTEQSVSET QIPLTSGIKL ESLNYIVTVE LGGKNMSLIV DTGSDLTWVQ CQPCRSCYNQ QGPLYDPSVS SSYKTVFCNS STCQDLVAAT
201: SNSGPCGGNN GVVKTPCEYV VSYGDGSYTR GDLASESILL GDTKLENFVF GCGRNNKGLF GGSSGLMGLG RSSVSLVSQT LKTFNGVFSY CLPSLEDGAS
301: GSLSFGNDSS VYTNSTSVSY TPLVQNPQLR SFYILNLTGA SIGGVELKSS SFGRGILIDS GTVITRLPPS IYKAVKIEFL KQFSGFPTAP GYSILDTCFN
401: LTSYEDISIP IIKMIFQGNA ELEVDVTGVF YFVKPDASLV CLALASLSYE NEVGIIGNYQ QKNQRVIYDT TQERLGIVGE NCRV

Arabidopsis Description

At1g79720 [Source:UniProtKB/TrEMBL;Acc:Q8RX60]
SUBAcon: [extracellular,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.