Factsheet for Zm00001d039774_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006366_P001	Maize	cytosol	99.57	99.57
Zm00001d052005_P001	Maize	cytosol	99.57	99.57
Zm00001d017669_P001	Maize	cytosol	99.57	99.57
Zm00001d002746_P001	Maize	cytosol	99.57	99.57
Zm00001d033961_P001	Maize	cytosol	99.57	99.57
Zm00001d035261_P001	Maize	cytosol	99.14	99.14
Zm00001d035258_P001	Maize	cytosol	98.71	98.71
Zm00001d009724_P009	Maize	cytosol	98.71	21.52
Zm00001d008930_P003	Maize	cytosol	1.29	0.44
Zm00001d011352_P001	Maize	cytosol	1.29	0.44
Zm00001d044479_P001	Maize	cytosol	1.29	0.44
Zm00001d039362_P002	Maize	cytosol	0.86	0.3
Zm00001d018088_P001	Maize	cytosol	0.0	0.0
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	0.0	0.0
Zm00001d034423_P001	Maize	cytosol	0.0	0.0
Zm00001d012121_P002	Maize	cytosol	0.0	0.0
Zm00001d004494_P001	Maize	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:17.7.5.2	Gene3D:3.30.160.20	Gene3D:3.30.70.1660	UniProt:A0A1D6ML41	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0006412	GO:GO:0006415	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
ProteinID:ONM29928.1	InterPro:PCRF	PFAM:PF00472	PFAM:PF03462	PANTHER:PTHR43116	PANTHER:PTHR43116:SF1
InterPro:Pep_chain_release_fac_I_II	SMART:SM00937	SUPFAM:SSF75620	UniParc:UPI0004DE93E3	EnsemblPlantsGene:Zm00001d039774	EnsemblPlants:Zm00001d039774_P001
EnsemblPlants:Zm00001d039774_T001	:	:	:	:	:

Description

Peptide chain release factor PrfB1 chloroplastic

Coordinates

chr3:+:14506828..14508358

Molecular Weight (calculated)

26195.7 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.386

Length

233 amino acids

Sequence
(BLAST)

001: MQDWADMLLR MYVRWGEKQR YKTRVVEKSP GEQAGIKSAT VELEGRYAYG YLSGEKGTHR IVRQSPFNAK GLRQTSFAGV EVMPLLPEES MAVDIPEEDL
101: EISFTRAGGK GGQNVNKVET VVRMVHIPTG IAVRCSEERS QLANKIKALS RLKAKLLVIA LEQRASEIKQ IRGDIVKAEW GQQIRNYVFH PYKLVKDVRT
201: GCETSDITGV MDGELDPFIR AYLKYKLTAA ATS

Best Arabidopsis Sequence Match ( AT1G56350.1 )
(BLAST)

001: MLSLIIRRSR SRFIIHGIKI SCNSLSAVDS SSSVLVSRRT FSSTPALSYF GFNYGKISNL NQRFGNYAYS GSSFASSTRS LSSEAVAVAA TCDGLTVERI
101: IANQWPILDE NEGDWKSHAA AIAQSIQVIK RRLQWKKLLV RLKVLSAELN KSDLWDDPTH AGKISREHGS LTGKMKGVMT FERELLEHID MLKLAKEEND
201: SELESETLKA LIDMRRVSKE KELEALLSAD NDPCSCYIEV QAGAGGTESN DWAAMVMEMY KTWAQRRKFS VTVVDEAPGE IAGIKRATIK VNGEYAYGYA
301: KAEVGVHRLV RISPFDSGKR RHTSFAAVAV IPILGDGSTR VEINDSDLRI ERFRSGGAGG QHANTTDSAV RIVHIPTGIT ATCQNERSQH SNKASAMAVL
401: QSRLDQLEMA RQTAMNAQHT QSLTEISWGN QIRTYVLHPY RMVKDLRTNY EVSDPDSVLE GDLDGFILSF LSSSLDKDDP EH

Arabidopsis Description

PRFB2Peptide chain release factor PrfB2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I532]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.