Factsheet for Zm00001d002746_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006366_P001	Maize	cytosol	100.0	100.0
Zm00001d052005_P001	Maize	cytosol	100.0	100.0
Zm00001d033961_P001	Maize	cytosol	100.0	100.0
Zm00001d017669_P001	Maize	cytosol	100.0	100.0
Zm00001d035261_P001	Maize	cytosol	99.57	99.57
Zm00001d039774_P001	Maize	cytosol	99.57	99.57
Zm00001d035258_P001	Maize	cytosol	99.14	99.14
Zm00001d009724_P009	Maize	cytosol	99.14	21.61
Zm00001d008930_P003	Maize	cytosol	1.29	0.44
Zm00001d011352_P001	Maize	cytosol	1.29	0.44
Zm00001d044479_P001	Maize	cytosol	1.29	0.44
Zm00001d039362_P002	Maize	cytosol	0.86	0.3
Zm00001d012121_P002	Maize	cytosol	0.0	0.0
Zm00001d018088_P001	Maize	cytosol	0.0	0.0
Zm00001d034423_P001	Maize	cytosol	0.0	0.0
Zm00001d004494_P001	Maize	cytosol, mitochondrion	0.0	0.0
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

MapMan:17.7.5.2	Gene3D:3.30.160.20	Gene3D:3.30.70.1660	UniProt:A0A1D6E418	ProteinID:AQK55734.1	ProteinID:AQK73710.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003747	GO:GO:0005488	GO:GO:0006412
GO:GO:0006415	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	ProteinID:ONM09046.1	ProteinID:ONM15265.1	ProteinID:ONM23612.1	InterPro:PCRF
PFAM:PF00472	PFAM:PF03462	ScanProsite:PS00745	PANTHER:PTHR43116	PANTHER:PTHR43116:SF1	InterPro:Pep_chain_release_fac_I_II
SMART:SM00937	SUPFAM:SSF75620	UniParc:UPI0004DE7C1A	EnsemblPlantsGene:Zm00001d002746	EnsemblPlants:Zm00001d002746_P001	EnsemblPlants:Zm00001d002746_T001

Description

Peptide chain release factor PrfB1 chloroplastic

Coordinates

chr2:+:21333098..21334628

Molecular Weight (calculated)

26167.7 Da

IEP (calculated)

9.736

GRAVY (calculated)

-0.397

Length

233 amino acids

Sequence
(BLAST)

001: MQDWADMLLR MYVRWGEKQR YKTRVVEKSP GEQAGIKSAT VELEGRYAYG YLSGEKGTHR IVRQSPFNAK GLRQTSFAGV EVMPLLPEES MAVDIPEEDL
101: EISFTRAGGK GGQNVNKVET AVRMVHIPTG IAVRCSEERS QLANKIKALS RLKAKLLVIA LEQRASEIKQ IRGDIVKAEW GQQIRNYVFH PYKLVKDVRT
201: GCETSDITGV MDGELDPFIR AYLKYKLTAA ATS

Best Arabidopsis Sequence Match ( AT5G36170.1 )
(BLAST)

001: MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIVFAA QESNLSVSNE NETSEWLMQD FYTLRKDVEI ASARVEEIRA
101: SANLQQLEQE ITNLESKATD TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG IIKELNKSLD KFELTQLLSG
201: PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE
301: VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTEERSQ LANKTRALIR LKAKLMVIAE EQRATEIKEI RGDAVKAEWG
401: QQIRNYVFHP YKLVKDVRTG HETSDITSVM DGDLDPFIKA YLKHKYTLAM ASAVTN

Arabidopsis Description

PRFB1Peptide chain release factor PrfB1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVY0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.