Factsheet for Zm00001d044978_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62380.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT1G62380.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT1G62380.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT1G62380.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT1G62380.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT1G62380.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT1G62380.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT1G62380.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	88.62	41.92
KRH73355	Soybean	cytosol	5.69	7.53
Zm00001d036955_P001	Maize	cytosol	17.07	7.17
KRH73352	Soybean	cytosol	15.45	6.19
Zm00001d000163_P001	Maize	extracellular	15.45	6.07
Zm00001d024843_P001	Maize	cytosol	15.45	6.05
Zm00001d024852_P001	Maize	cytosol	15.45	6.03
Zm00001d024851_P001	Maize	cytosol	15.45	6.03
Zm00001d024850_P001	Maize	cytosol	15.45	6.03
Zm00001d011208_P001	Maize	cytosol	15.45	5.99
AT1G62380.1	Thale cress	cytosol	15.45	5.94
Zm00001d004719_P001	Maize	cytosol	14.63	5.81
Zm00001d004718_P001	Maize	cytosol	14.63	5.81
VIT_12s0059g01380.t01	Wine grape	cytosol	14.63	5.66
CDY32039	Canola	cytosol	14.63	5.62
CDY19546	Canola	cytosol	14.63	5.62
CDY12944	Canola	cytosol	14.63	5.62
CDY08654	Canola	cytosol	14.63	5.62
Bra034504.1-P	Field mustard	cytosol	14.63	5.62
Bra027049.1-P	Field mustard	cytosol	14.63	5.62
Zm00001d015860_P001	Maize	cytosol	10.57	5.56
KRH14787	Soybean	cytosol	13.82	5.54
KRH14788	Soybean	cytosol	13.82	5.54
Zm00001d020686_P001	Maize	cytosol	14.63	5.52
KRH41775	Soybean	cytosol	13.82	5.48
PGSC0003DMT400036081	Potato	cytosol	13.82	5.38
Solyc12g005940.1.1	Tomato	cytosol	13.82	5.38
Zm00001d018211_P001	Maize	extracellular	13.82	5.36
Zm00001d024853_P001	Maize	plastid	15.45	5.34
Zm00001d005927_P001	Maize	cytosol	9.76	5.31
Bra015380.1-P	Field mustard	cytosol	13.82	5.3
CDY18281	Canola	cytosol	13.82	5.3
CDY53397	Canola	cytosol	13.82	5.3
Zm00001d052136_P001	Maize	cytosol	13.82	5.26
KRH14791	Soybean	cytosol	13.01	5.21
Solyc07g049530.2.1	Tomato	nucleus	13.01	5.08
Solyc07g049550.2.1	Tomato	nucleus	13.01	5.06
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	13.01	5.03
Solyc02g036350.2.1	Tomato	extracellular	13.01	5.02
PGSC0003DMT400055332	Potato	cytosol	13.01	5.02
AT1G05010.1	Thale cress	cytosol	13.01	4.95
KRH14794	Soybean	nucleus	12.2	4.76
KRH73345	Soybean	nucleus	12.2	4.76
KRH11502	Soybean	cytosol	12.2	4.72
KRH36520	Soybean	cytosol	12.2	4.72
KRH02009	Soybean	cytosol	12.2	4.7
AT1G12010.1	Thale cress	cytosol	12.2	4.69
Solyc02g081190.2.1	Tomato	cytosol	11.38	4.38
PGSC0003DMT400043087	Potato	cytosol	11.38	4.38
Bra019734.1-P	Field mustard	cytosol	11.38	4.38
CDY66260	Canola	cytosol	11.38	4.36
CDY34603	Canola	cytosol	11.38	4.36
Bra031798.1-P	Field mustard	cytosol	11.38	4.36
KRH73354	Soybean	cytosol	4.88	3.05
VIT_00s2086g00010.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	4.88	2.9

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100274827	MapMan:35.1	ProteinID:AQL01224.1	UniProt:B6SJT7	InterPro:Coatomer_esu
EMBL:EU953002	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810
GO:GO:0006890	GO:GO:0008150	InterPro:IPR011990	PFAM:PF04733	PANTHER:PTHR10805	PANTHER:PTHR10805:SF1
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000182B929	EnsemblPlantsGene:Zm00001d044978	EnsemblPlants:Zm00001d044978_P001	EnsemblPlants:Zm00001d044978_T001	SEG:seg

Description

1-aminocyclopropane-1-carboxylate oxidase 1

Coordinates

chr9:-:9100281..9102917

Molecular Weight (calculated)

13701.4 Da

IEP (calculated)

9.832

GRAVY (calculated)

-0.153

Length

123 amino acids

Sequence
(BLAST)

001: MASPDLLFNL RNLFYLGAYQ AAINNIDILG LDAAAAAERD AIVFRSYIAL GSYQVRTHLA SGASAATSLQ AVKLLALYLT GDKRRYVMKK INISKQNDKF
101: QQTAYQEGEI GNDDTLWRIS PRR

Best Arabidopsis Sequence Match ( AT2G34840.1 )
(BLAST)

001: MSAMGAGPDH LFNLRNNFYL GAYQTAINNS EIANLSPENA VERDCLVFRS YIALGSYQLV ISEIDESAAT PLQAVKLLAM YLSTPQNKES TISSLKEWLA
101: DSTIGNNDTL RLIAGIIFMH EEDYNETLKH THAGGTMDLY ALNVQIFIKM HRAEYAEKQL RVMQQIDEDH TLTQLASAWL NLAVGGSKIQ EAYLIFEDFS
201: EKYPMTCLIL NGKAVCCMQM GNFDEAETLL LEALNKDAKD PETLANLVVC SLHVGKSSSR HLSQLKLSHP EHILVKRVSS AEDNFERAVQ LVA

Arabidopsis Description

Coatomer subunit epsilon-2 [Source:UniProtKB/Swiss-Prot;Acc:O64748]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.