Factsheet for Solyc12g005940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036081	Potato	cytosol	97.15	97.15
Solyc07g049530.2.1	Tomato	nucleus	89.87	90.16
Solyc07g049550.2.1	Tomato	nucleus	88.29	88.29
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	79.43	78.93
KRH36520	Soybean	cytosol	79.11	78.62
KRH02009	Soybean	cytosol	79.11	78.37
KRH11502	Soybean	cytosol	78.8	78.3
Solyc02g036350.2.1	Tomato	extracellular	78.16	77.43
Solyc02g081190.2.1	Tomato	cytosol	77.22	76.25
Bra034504.1-P	Field mustard	cytosol	71.52	70.62
CDY32039	Canola	cytosol	71.52	70.62
CDY08654	Canola	cytosol	71.2	70.31
Bra027049.1-P	Field mustard	cytosol	70.57	69.69
CDY12944	Canola	cytosol	70.57	69.69
CDY19546	Canola	cytosol	70.57	69.69
AT1G12010.1	Thale cress	cytosol	70.25	69.38
Bra019734.1-P	Field mustard	cytosol	70.25	69.38
CDY66260	Canola	cytosol	69.62	68.54
Bra031798.1-P	Field mustard	cytosol	69.62	68.54
CDY34603	Canola	cytosol	69.3	68.22
AT1G62380.1	Thale cress	cytosol	68.99	68.12
Solyc07g026650.2.1	Tomato	cytosol	47.78	50.17
Solyc06g060070.2.1	Tomato	cytosol	46.84	47.13
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	31.01	37.69
Zm00001d044978_P001	Maize	extracellular	5.38	13.82

Protein Annotations

MapMan:11.5.1.2	Gene3D:2.60.120.330	ncoils:Coil	InterPro:DIOX_N	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009693	GO:GO:0009815	GO:GO:0009835	GO:GO:0009987	GO:GO:0016491	GO:GO:0030246
GO:GO:0031418	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443
UniProt:K4DBD2	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF381	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc12g005940.1	EnsemblPlants:Solyc12g005940.1.1	UniParc:UPI000276A622	SEG:seg

Description

No Description!

Coordinates

chr12:-:563621..566130

Molecular Weight (calculated)

36084.5 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.416

Length

316 amino acids

Sequence
(BLAST)

001: MENFPIINLE KLNGAERVAT MEKINDACEN WGFFELVNHG IPHEVMDTVE KLTKGHYKKC MEQRFKELVA KKGLEGVEVE VTDMDWESTF FLRHLPSSNI
101: SQLPDLDDVY REVMRDFAKR LEKLAEELLD LLCENLGLEK SYLKNTFYGS KGPNFGTKVS NYPPCPKPDL IKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GRWIDVPPMR HSIVVNLGDQ LEVITNGKYK SVMHRVIAQK DGTRMSLASF YNPGNDALIY PAPALVDKEA EEHNKQVYPK FMFDDYMKLY ANLKFQAKEP
301: RFEAMKAMES DPIAIA

Best Arabidopsis Sequence Match ( AT1G05010.1 )
(BLAST)

001: MESFPIINLE KLNGEERAIT MEKIKDACEN WGFFECVNHG ISLELLDKVE KMTKEHYKKC MEERFKESIK NRGLDSLRSE VNDVDWESTF YLKHLPVSNI
101: SDVPDLDDDY RTLMKDFAGK IEKLSEELLD LLCENLGLEK GYLKKVFYGS KRPTFGTKVS NYPPCPNPDL VKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GEWVDVPPVK HSIVVNLGDQ LEVITNGKYK SVEHRVLSQT DGEGRMSIAS FYNPGSDSVI FPAPELIGKE AEKEKKENYP RFVFEDYMKL YSAVKFQAKE
301: PRFEAMKAME TTVANNVGPL ATA

Arabidopsis Description

ACO41-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.