Factsheet for Bra034504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62380.1	Bra000267.1-P	AT2G42580.1	19000166
AT1G62380.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32039	Canola	cytosol	99.38	99.38
Bra027049.1-P	Field mustard	cytosol	95.0	95.0
AT1G62380.1	Thale cress	cytosol	90.0	90.0
Bra019734.1-P	Field mustard	cytosol	86.88	86.88
Bra031798.1-P	Field mustard	cytosol	86.25	85.98
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	72.19	72.64
Solyc07g049530.2.1	Tomato	nucleus	71.25	72.38
KRH02009	Soybean	cytosol	71.88	72.1
Solyc07g049550.2.1	Tomato	nucleus	70.94	71.84
PGSC0003DMT400036081	Potato	cytosol	70.94	71.84
Solyc12g005940.1.1	Tomato	cytosol	70.62	71.52
PGSC0003DMT400055332	Potato	cytosol	70.94	71.16
KRH36520	Soybean	cytosol	70.62	71.07
KRH11502	Soybean	cytosol	70.31	70.75
Solyc02g036350.2.1	Tomato	extracellular	70.31	70.53
Solyc02g081190.2.1	Tomato	cytosol	69.69	69.69
Bra015380.1-P	Field mustard	cytosol	69.69	69.47
PGSC0003DMT400043087	Potato	cytosol	69.38	69.38
Bra031090.1-P	Field mustard	cytosol	45.94	48.68
Bra015675.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	46.88	48.54
Bra008302.1-P	Field mustard	cytosol	42.19	47.54
Bra003687.1-P	Field mustard	cytosol	45.0	47.21
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.94	38.08
Zm00001d044978_P001	Maize	extracellular	5.62	14.63

Protein Annotations

MapMan:11.5.1.2	Gene3D:2.60.120.330	EnsemblPlantsGene:Bra034504	EnsemblPlants:Bra034504.1	EnsemblPlants:Bra034504.1-P	InterPro:DIOX_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	UniProt:M4F0B1
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF193
SUPFAM:SSF51197	UniParc:UPI000253E57A	SEG:seg	:	:	:

Description

AT1G62380 (E=8e-157) ACO2, ATACO2 | ACO2 (ACC OXIDASE 2); 1-aminocyclopropane-1-carboxylate oxidase

Coordinates

chrScaffold000096:+:586245..588131

Molecular Weight (calculated)

36249.1 Da

IEP (calculated)

4.743

GRAVY (calculated)

-0.500

Length

320 amino acids

Sequence
(BLAST)

001: MEQTIKFPVV NLSKLNGEER DQTMALINDA CENWGFFEIV NHGLPHDLMD NVEKMTKEHY KKSMEQKFND MLRSKGLEKL ETEVEDVDWE STFYLRHLPQ
101: SNLYDIPDMS DEYRTAMKDF GKRLENLAED LLDLLCENLG LENGYLKKVF HGTKGPTFGT KVSNYPPCPG PEMIKGLRAH TDAGGIILLF QDDKVSGLQL
201: LKDGDWIDVP PLNHSIVINL GDQLEVITNG KYKSVMHRVV TQKEGNRMSI ASFYNPGSDA EISPASSLAS KETEYPSFVF DDYMKLYAGV KFQPKEPRFE
301: AMKNATAVTE LNPAASVETF

Best Arabidopsis Sequence Match ( AT1G62380.1 )
(BLAST)

001: MEKNMKFPVV DLSKLNGEER DQTMALINEA CENWGFFEIV NHGLPHDLMD KIEKMTKDHY KTCQEQKFND MLKSKGLDNL ETEVEDVDWE STFYVRHLPQ
101: SNLNDISDVS DEYRTAMKDF GKRLENLAED LLDLLCENLG LEKGYLKKVF HGTKGPTFGT KVSNYPPCPK PEMIKGLRAH TDAGGIILLF QDDKVSGLQL
201: LKDGDWIDVP PLNHSIVINL GDQLEVITNG KYKSVLHRVV TQQEGNRMSV ASFYNPGSDA EISPATSLVE KDSEYPSFVF DDYMKLYAGV KFQPKEPRFA
301: AMKNASAVTE LNPTAAVETF

Arabidopsis Description

ACO21-aminocyclopropane-1-carboxylate oxidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q41931]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.