CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62380.1	KRH22291	AT2G42580.1	19000166
AT1G62380.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36520	Soybean	cytosol	97.17	97.17
KRH02009	Soybean	cytosol	86.16	85.89
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	85.85	85.85
Solyc02g036350.2.1	Tomato	extracellular	82.08	81.82
Solyc07g049530.2.1	Tomato	nucleus	80.5	81.27
Solyc02g081190.2.1	Tomato	cytosol	81.76	81.25
PGSC0003DMT400043087	Potato	cytosol	81.45	80.94
PGSC0003DMT400055332	Potato	cytosol	81.13	80.88
KRH73354	Soybean	cytosol	50.0	80.71
Solyc07g049550.2.1	Tomato	nucleus	79.56	80.06
PGSC0003DMT400036081	Potato	cytosol	78.3	78.8
Solyc12g005940.1.1	Tomato	cytosol	78.3	78.8
KRH14794	Soybean	nucleus	77.36	78.1
KRH73345	Soybean	nucleus	77.04	77.78
KRH41775	Soybean	cytosol	74.53	76.45
KRH73352	Soybean	cytosol	72.96	75.57
KRH14791	Soybean	cytosol	72.01	74.59
KRH14788	Soybean	cytosol	71.7	74.27
KRH14787	Soybean	cytosol	71.38	73.94
CDY66260	Canola	cytosol	71.38	70.72
Bra031798.1-P	Field mustard	cytosol	71.38	70.72
Bra019734.1-P	Field mustard	cytosol	71.07	70.62
CDY34603	Canola	cytosol	71.07	70.41
CDY32039	Canola	cytosol	70.75	70.31
Bra034504.1-P	Field mustard	cytosol	70.75	70.31
CDY08654	Canola	cytosol	70.44	70.0
AT1G12010.1	Thale cress	cytosol	70.13	69.69
Bra027049.1-P	Field mustard	cytosol	70.13	69.69
CDY12944	Canola	cytosol	70.13	69.69
CDY19546	Canola	cytosol	70.13	69.69
KRH73355	Soybean	cytosol	20.13	68.82
AT1G62380.1	Thale cress	cytosol	68.55	68.12
KRH64615	Soybean	cytosol	51.57	53.25
KRH53298	Soybean	nucleus	51.26	53.09
KRH60136	Soybean	endoplasmic reticulum	45.91	47.56
KRH41426	Soybean	cytosol	45.28	46.91
KRH49052	Soybean	cytosol	43.71	45.42
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.93	35.38
Zm00001d044978_P001	Maize	extracellular	4.72	12.2

Protein Annotations

MapMan:11.5.1.2	Gene3D:2.60.120.330	EMBL:ACUP02009213	ncoils:Coil	InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_15G112700
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009693	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	UniProt:I1MFL6
InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EnsemblPlants:KRH11502	ProteinID:KRH11502	ProteinID:KRH11502.1
InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF383
SUPFAM:SSF51197	UniParc:UPI000233B5B7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:8882296..8884764

Molecular Weight (calculated)

35845.0 Da

IEP (calculated)

4.793

GRAVY (calculated)

-0.281

Length

318 amino acids

Sequence
(BLAST)

001: MANFPVVDMG KLNTEERAAA MEIIKDACEN WGFFELVNHG ISIELMDTVE RLTKEHYKKT MEQRFKEMVA SKGLESVQSE INDLDWESTF FLRHLPVSNV
101: SDNSDLDEEY RKTMKKFALE LEKLAEQLLD LLCENLGLEK GYLKKVFYGS KGPNFGTKVS NYPPCPTPDL IKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: DQWIDVPPMR HSIVINLGDQ LEVITNGKYK SVMHRVIAQA DDTRMSIASF YNPGDDAVIS PAPALVKELD ETSQVYPKFV FDDYMKLYAG LKFQAKEPRF
301: EAMKANASVV DVGAIATV

Best Arabidopsis Sequence Match ( AT1G05010.1 )
(BLAST)

001: MESFPIINLE KLNGEERAIT MEKIKDACEN WGFFECVNHG ISLELLDKVE KMTKEHYKKC MEERFKESIK NRGLDSLRSE VNDVDWESTF YLKHLPVSNI
101: SDVPDLDDDY RTLMKDFAGK IEKLSEELLD LLCENLGLEK GYLKKVFYGS KRPTFGTKVS NYPPCPNPDL VKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GEWVDVPPVK HSIVVNLGDQ LEVITNGKYK SVEHRVLSQT DGEGRMSIAS FYNPGSDSVI FPAPELIGKE AEKEKKENYP RFVFEDYMKL YSAVKFQAKE
301: PRFEAMKAME TTVANNVGPL ATA

Arabidopsis Description

ACO41-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.