CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14794	Soybean	nucleus	96.83	96.83
KRH73354	Soybean	cytosol	52.7	84.26
VIT_12s0059g01380.t01	Wine grape	cytosol	82.22	81.45
KRH41775	Soybean	cytosol	80.0	81.29
KRH14788	Soybean	cytosol	79.05	81.11
KRH14791	Soybean	cytosol	79.05	81.11
KRH73352	Soybean	cytosol	78.73	80.78
KRH14787	Soybean	cytosol	78.1	80.13
KRH11502	Soybean	cytosol	77.78	77.04
KRH36520	Soybean	cytosol	77.46	76.73
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	77.14	76.42
KRH02009	Soybean	cytosol	76.83	75.86
KRH73355	Soybean	cytosol	21.9	74.19
KRH53298	Soybean	nucleus	52.06	53.42
KRH64615	Soybean	cytosol	52.06	53.25
KRH60136	Soybean	endoplasmic reticulum	48.25	49.51
KRH41426	Soybean	cytosol	48.25	49.51
KRH49052	Soybean	cytosol	46.03	47.39
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	31.11	37.69
Zm00001d044978_P001	Maize	extracellular	4.76	12.2

Protein Annotations

EntrezGene:100814810	MapMan:11.5.1.2	Gene3D:2.60.120.330	UniProt:A0A0R0L1Z4	EMBL:ACUP02001273	ncoils:Coil
InterPro:DIOX_N	EnsemblPlantsGene:GLYMA_02G268000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123
InterPro:IPR027443	EnsemblPlants:KRH73345	ProteinID:KRH73345	ProteinID:KRH73345.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF193	SUPFAM:SSF51197	UniParc:UPI000189D301
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:45262242..45264179

Molecular Weight (calculated)

36061.3 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.450

Length

315 amino acids

Sequence
(BLAST)

001: MTNFPLINLE KLSGEERNDT MEKIKDACEN WGFFELVNHG IPHDILDTVE RLTKEHYRKC MEERFKELVA SKGLDAVQTE VKDMDWESTF HLRHLPESNI
101: SEIPDLIDEY RKVMKDFALR LEKLAEQLLD LLCENLGLEK GYLKKAFYGS RGPTFGTKVA NYPPCPNPEL VKGLRPHTDA GGIILLFQDD KVSGLQLLKD
201: GQWVDVPPMR HSIVVNIGDQ LEVITNGKYK SVEHRVIAQT DGTRMSIASF YNPGSDAVIY PAPELLEKEA EEKNQLYPKF VFEDYMKLYA KLKFQAKEPR
301: FEAFKASNFG PIATV

Best Arabidopsis Sequence Match ( AT1G05010.1 )
(BLAST)

001: MESFPIINLE KLNGEERAIT MEKIKDACEN WGFFECVNHG ISLELLDKVE KMTKEHYKKC MEERFKESIK NRGLDSLRSE VNDVDWESTF YLKHLPVSNI
101: SDVPDLDDDY RTLMKDFAGK IEKLSEELLD LLCENLGLEK GYLKKVFYGS KRPTFGTKVS NYPPCPNPDL VKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GEWVDVPPVK HSIVVNLGDQ LEVITNGKYK SVEHRVLSQT DGEGRMSIAS FYNPGSDSVI FPAPELIGKE AEKEKKENYP RFVFEDYMKL YSAVKFQAKE
301: PRFEAMKAME TTVANNVGPL ATA

Arabidopsis Description

ACO41-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.