CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
vacuole 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73345	Soybean	nucleus	96.83	96.83
KRH73354	Soybean	cytosol	51.75	82.74
VIT_12s0059g01380.t01	Wine grape	cytosol	82.22	81.45
KRH41775	Soybean	cytosol	79.68	80.97
KRH14788	Soybean	cytosol	78.73	80.78
KRH14791	Soybean	cytosol	78.73	80.78
KRH73352	Soybean	cytosol	78.41	80.46
KRH14787	Soybean	cytosol	77.78	79.8
KRH11502	Soybean	cytosol	78.1	77.36
KRH36520	Soybean	cytosol	77.78	77.04
KRH73355	Soybean	cytosol	22.54	76.34
KRH51147	Soybean	cytoskeleton, cytosol, peroxisome	76.83	76.1
KRH02009	Soybean	cytosol	76.51	75.55
KRH53298	Soybean	nucleus	52.06	53.42
KRH64615	Soybean	cytosol	52.06	53.25
KRH60136	Soybean	endoplasmic reticulum	48.89	50.16
KRH41426	Soybean	cytosol	48.25	49.51
KRH49052	Soybean	cytosol	46.03	47.39
Zm00001d046848_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.16	36.54
Zm00001d044978_P001	Maize	extracellular	4.76	12.2

Protein Annotations

EntrezGene:100784455	MapMan:11.5.1.2	Gene3D:2.60.120.330	EMBL:ACUP02008524	ncoils:Coil	InterPro:DIOX_N
EnsemblPlantsGene:GLYMA_14G049500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009693	GO:GO:0009987	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114
UniProt:I1M7I2	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EnsemblPlants:KRH14794	ProteinID:KRH14794
ProteinID:KRH14794.1	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209
PANTHER:PTHR10209:SF193	SUPFAM:SSF51197	UniParc:UPI000233ACF8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:+:3838137..3840136

Molecular Weight (calculated)

36085.2 Da

IEP (calculated)

5.319

GRAVY (calculated)

-0.472

Length

315 amino acids

Sequence
(BLAST)

001: MTNFPVINLE KLNGEERNDT MEKIKDACEN WGFFELVNHG IPHDLLDTVE RLTKEHYRKC MEERFKEFMA SKGLDAVQTE VKDMDWESTF HLRHLPESNI
101: SEIPDLIDEY RKVMKDFALR LEKLAEQLLD LLCENLGLEK GYLKKAFYGS RGPTFGTKVA NYPPCPNPDL VKGLRPHTDA GGIVLLFQDD KVSGLQLLKD
201: GQWVDVPPMR HSIVVNIGDQ LEVITNGKYR SVEHRVIAQT DGTRMSIASF YNPGSDAVIY PAPELLEKEA EEKSQLYPKF VFEDYMKLYA KLKFQAKEPR
301: FEAFKASNFG PIATA

Best Arabidopsis Sequence Match ( AT1G05010.1 )
(BLAST)

001: MESFPIINLE KLNGEERAIT MEKIKDACEN WGFFECVNHG ISLELLDKVE KMTKEHYKKC MEERFKESIK NRGLDSLRSE VNDVDWESTF YLKHLPVSNI
101: SDVPDLDDDY RTLMKDFAGK IEKLSEELLD LLCENLGLEK GYLKKVFYGS KRPTFGTKVS NYPPCPNPDL VKGLRAHTDA GGIILLFQDD KVSGLQLLKD
201: GEWVDVPPVK HSIVVNLGDQ LEVITNGKYK SVEHRVLSQT DGEGRMSIAS FYNPGSDSVI FPAPELIGKE AEKEKKENYP RFVFEDYMKL YSAVKFQAKE
301: PRFEAMKAME TTVANNVGPL ATA

Arabidopsis Description

ACO41-aminocyclopropane-1-carboxylate oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q06588]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.